To Do Q: Difference between revisions

Latest revision as of 05:41, 28 August 2008

Homepage

to add favourite current papers & projects.

other pages

Papers:

tidy up topics and add introductions (definitions and Doyle's group approach to each topic)
check if papers listed on papers by topic are relevant or need updating
ensure papers appearing by topic also appear on papers by year

Group:

to update personel present and past

Research and J. Doyle’s Bio:

to expand and get edited by Prof. Doyle.
Group to contribute

Physiology page set up but need more content and more papers!!!

Network architecture and protocols needs editing - too long text and too general? Needs add interest with diagrams etc.,

Complex networks - add newer papers?

Add pages or create category for public website?

Find location for: <www.nsf.gov/attachments/111101/public/Doyle1NSFBio_HardLimits.ppt>

Meetings, Calendar, Tips maintenance

Students/Prof Doyle to edit/add to useful stuff to:

Tips: Research papers, Publishing and Other Trivia

Calendar to add Bio and Physio meetings at Caltech and related conferences, continue updating relevant CDS course links

Group Meetings- keep using it for group meetings

Special:Allpages

See section below new pages copied from old pages

overall

Website needs

have Group members update the wiki!
more logical structure,
definition of terminology
define how Prof Doyle's group approaches each topic
to define and select "categories".
structure sections to public wanting to get into these areas of research
consider making website easier to find now that draft is almost done!!! eg redirect or ...

Links / Access

to add many more internal wiki links and add "categories"
to add "Presentations" (Hana/Lun adjusted LocalSettings.phpto allow ppt or pdf upload)

to update File permisssions last set by Lachlan and Lun July 2007.

Set up accounts:

login then to set up separate username/passwords
- See Help:Contents for tips on creating accounts.

and check pages: Special pages:User list; Special pages: User rights management

- someone else in Doyle's group need to take over setting up accounts

images

add more diagrams and images!

Other features that could be added to wiki

Case Sensitivity

To make page titles and usernames case-sensitive, added $wgCapitalLinks = false; to Local settings.php

Social networking bookmarks

http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>

Version 1.10

Upgrading to Media Wiki 1.10 version also allows Private pages to viewed by restricted members. Data and files would need to be copied over to the new wiki.

Search and bibtex

Optional to copy page source from:
http://netlab.caltech.edu/pubs_search.php
and put all papers into an array for bibtex and searching... (See array set up by David Wei and Lachlan Andrew and Hana at Netlab website)

Some one can copy code over and insert it into this wiki if this is worthwhile and not time consuming

Old webpages

http://www.cds.caltech.edu/~doyle/home.htm

http://www.cds.caltech.edu/~doyle/

new pages copied from old pages

The following pages has had text copied from Doyle's old website then reformatted and citations/links added.

Does someone copy over old external links and files/slides next? Papers/Books have been mostly uploaded to wiki (and also appears on Papers by year)

Wiki page	Most Content from old website page
Complexity and robustness	<http://www.cds.caltech.edu/~doyle/SFI_robustness/>
Complex_networks	<http://www.cds.caltech.edu/~doyle/CmplxNets/>
J. Doyle’s Bio J. Doyle's Bio Athletics	<http://www.cds.caltech.edu/~doyle/CV.html> <http://www.cds.caltech.edu/~doyle/CVath.html> text and photos copied to (only a few things listed for period 2000-2008 in Aug-Jul 2008)

@@ Line 1: / Line 1: @@
 ==Homepage==
+*to add favourite current papers & projects.
-==Papers==
+==other pages==
-[[Papers]] page:
+[[Papers]]:
-*Converted ext paper to internal links for 2005-2009 papers
+*tidy up topics and add introductions (definitions and Doyle's group approach to each topic)
-*copied joint Netlab papers to CDS server next and adjust the ext links to int links
+*check if papers listed on papers by topic are relevant or need updating
-*everyone can add their papers to the website.
+*ensure papers appearing by topic also appear on papers by year
-==Other pages==
-[[J. Doyle’s Bio]] page: Do we copy J Doyle's CV from old websites -see
-[[Group]] page: Asked Gloria & Lijun to add to list of past & present people. Lun has added quite a few via CDS/Netlab/Google pages.
+[[Group]]:
+*to update personel present and past
-[[Research]] page: need to expand.
+[[Research]] and [[J. Doyle’s Bio]]:
+*to expand and get edited by Prof. Doyle.
+*[[Group]] to contribute
-[[Complex networks]] need to update and edit.
+[[Physiology]] page set up but need more content and more papers!!!
-[[Systems biology]] needs expanding and updating.
+[[Network architecture and protocols]] needs editing - too long text and too general? Needs add interest with diagrams etc.,
-Need to define and select "categories".
+[[Complex networks]] - add newer papers?
-Need to get group contributing to wiki.
+Add pages or create category for public website?
-==Other==
+Find location for: <www.nsf.gov/attachments/111101/public/Doyle1NSFBio_HardLimits.ppt>
-===Links / Access ===
+===Meetings, Calendar, Tips maintenance===
+Students/Prof Doyle to edit/add to useful stuff to:
+[[Tips: Research papers, Publishing and Other Trivia]]
+[[Calendar]] to add Bio and Physio meetings at Caltech and related conferences, continue updating relevant CDS course links
+[[Group Meetings]]- keep using it for group meetings
+[[Special:Allpages]]
+See section below '''new pages copied from old pages'''
-Need to increase internal wiki links and add "categories"
+==overall==
+===Website needs===
+* have [[Group]] members update the wiki!
+* more logical structure,
+* definition of terminology
+* define how Prof Doyle's group approaches each topic
+* to define and select "categories".
+* structure sections to public wanting to get into these areas of research
+* consider making website easier to find now that draft is almost done!!! eg redirect or ...
-Need to find out how to link "Presentations"
+===Links / Access ===
+*to add many more internal wiki links and add "categories"
+*to add "Presentations" (Hana/Lun adjusted LocalSettings.phpto allow ppt or pdf upload)
-File permisssions last set by Lachlan and Lun July 2007.
+* to update File permisssions last set by Lachlan and Lun July 2007.
-Ask Lun:
+Set up accounts:
-* to set up separate username/password for :John Doyle, Lun & Hana,
+*login then to set up separate username/passwords
-**Do you want Individual users or group users?
 **See [[Help:Contents]] for tips on creating accounts.
+and check pages: Special pages:User list; Special pages: User rights management
+**someone else in Doyle's group need to take over setting up accounts
 ===images===
-Shrink Images into thumbnail using Photoshop on Netlab's remote desktop later:
+*add more diagrams and images!
+==Other features that could be added to wiki==
+===Case Sensitivity===
+To make page titles and usernames case-sensitive, added ''$wgCapitalLinks = false;'' to Local settings.php
+===Social networking bookmarks===
+http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>
+===Version 1.10===
+Upgrading to Media Wiki 1.10 version also allows Private pages to viewed by restricted members.
+Data and files would need to be copied over to the new wiki.
+===Search and bibtex===
+Optional to copy page source from:<br>
+http://netlab.caltech.edu/pubs_search.php<br>
+and put all papers into an array for bibtex and searching...
+(See array set up by David Wei and Lachlan Andrew and Hana at Netlab website)
-Ask to download photo of Prof's John & Marie... See Bio page
+Some one can copy code over and insert it into this wiki if this is worthwhile and not time consuming
 ==Old webpages==
@@ Line 48: / Line 88: @@
 http://www.cds.caltech.edu/~doyle/
-==Hana's log hours==
+===new pages copied from old pages===
-{| border=1
+The following pages has had text copied from Doyle's old website then reformatted and citations/links added.
-!Date
-!Time
+Does someone copy over old external links and files/slides next?
-!Hrs
+Papers/Books have been mostly uploaded to wiki (and also appears on Papers by year)
-|-
-|7/8/07 Lun helped! ||2-6.30pm ||4.5
+{| border="1"
-|-
+!Wiki page
-|7/9/07 ||10am-1pm ||3
+!Most Content from old website page
-|-
-|7/15/07 Lun helped||12-3.30pm||3.5
-|-
-|7/16/07||12-12.30am||0.5
-|-
-|7/18/07||4-4.30pm, 6-7pm||1.5
-|-
-|7/27/07||10-10.30||0.5
-|-
-|7/31/07||12-12.30||0.5
-|-
-|8/2/07||2.30-4.30||2.0
-|-
-|8/4/07||4.30-5||0.5
 |-
-|8/10/07||4-6.30||2.5
+|[[Complexity and robustness]]|| <http://www.cds.caltech.edu/~doyle/SFI_robustness/>
 |-
-|8/14/07 ||9.30-11.30||2
+|[[Complex_networks]]|| <http://www.cds.caltech.edu/~doyle/CmplxNets/>
 |-
-|8/17/07||6.30-7.30||1
+|[[J. Doyle’s Bio]] <br> [[J. Doyle's Bio Athletics]]
+|<http://www.cds.caltech.edu/~doyle/CV.html><br>
+<http://www.cds.caltech.edu/~doyle/CVath.html> <br>
+text and photos copied to  (only a few things listed for period 2000-2008 in Aug-Jul 2008)
 |}
-Waiting on Betta at Netlab to arrange payment account.
-Lun: installed wiki, enabled LocalSettings to upload, edited current/past Group (adding links & names, edit main page/structure); hidden edit tabs to users not logged in
-Hana: copied links to papers from Netlab & Lun's page, Systems-Biol page, J DOyle's old page onto wiki, set up to do list / main page/stucture/help page/sidebar/research/papers pages & bio copied. Added IEEE explore publications to pages.