To Do Q: Difference between revisions

From John C. Doyle
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==Homepage==
==Homepage==
Is the home page too long?
*to add favourite current papers & projects.


Can we put all the people on the [[Group]] page instead of on the front page?
==other pages==
[[Papers]]:
*tidy up topics and add introductions (definitions and Doyle's group approach to each topic)
*check if papers listed on papers by topic are relevant or need updating
*ensure papers appearing by topic also appear on papers by year


Do we adjust colour of table & image on the homepage?


Edit Blossom picture to fit homepage better?
[[Group]]:
*to update personel present and past


Fixed code & preserved table format Friday 4.30pm July 13 07.
[[Research]] and [[J. Doyle’s Bio]]:
*to expand and get edited by Prof. Doyle.
*[[Group]] to contribute


==Papers==
[[Physiology]] page set up but need more content and more papers!!!
[[Papers]] page:
*everyone can add their papers to the website.
* redo format of papers pages after consulting Lun & Prof Doyle
*ask about location of upload: enough room on wiki server??
* all of Netlab & Lun's homepage papers with J Doyle names are listed on Papers page
*need to transfer files to Netlab papers top CDS server next and then delete Netlab URL's
*Look up Google scholar & IEEE Explore at Netlab! for Steven & John's papers


==Other pages==
[[Network architecture and protocols]] needs editing - too long text and too general? Needs add interest with diagrams etc.,
[[J. Doyle’s Bio]] page: Do we copy J Doyle's CV from old websites -see


[[Group]] page: Do we ask Gloria to add list of past & present people?
[[Complex networks]] - add newer papers?


[[Research]] page: need to expand.
Add pages or create category for public website?


[[Complex networks]] need to update and edit.
Find location for: <www.nsf.gov/attachments/111101/public/Doyle1NSFBio_HardLimits.ppt>


[[Systems biology]] needs expanding and updating.
===Meetings, Calendar, Tips maintenance===
Students/Prof Doyle to edit/add to useful stuff to:


==Other==
[[Tips: Research papers, Publishing and Other Trivia]]
 
[[Calendar]] to add Bio and Physio meetings at Caltech and related conferences, continue updating relevant CDS course links
 
[[Group Meetings]]- keep using it for group meetings
 
[[Special:Allpages]]
 
See section below '''new pages copied from old pages'''
 
==overall==
===Website needs===
* have [[Group]] members update the wiki!
* more logical structure,
* definition of terminology
* define how Prof Doyle's group approaches each topic
* to define and select "categories".
* structure sections to public wanting to get into these areas of research
* consider making website easier to find now that draft is almost done!!! eg redirect or ...


===Links / Access ===
===Links / Access ===
Need to set up separate username/password for Gloria, & group: students/postdocs - (without sysops permission)
*to add many more internal wiki links and add "categories"
*to add "Presentations" (Hana/Lun adjusted LocalSettings.phpto allow ppt or pdf upload)  


Need to increase internal wiki links and add "categories"
* to update File permisssions last set by Lachlan and Lun July 2007.


Need some links for Systems biology
Set up accounts:
*login then to set up separate username/passwords
**See [[Help:Contents]] for tips on creating accounts.
and check pages: Special pages:User list; Special pages: User rights management
**someone else in Doyle's group need to take over setting up accounts


Need to find out how to link "Presentations"
===images===
*add more diagrams and images!


File permisssions last set by Lachlan and Lun July 2007.
==Other features that could be added to wiki==
===Case Sensitivity===
To make page titles and usernames case-sensitive, added ''$wgCapitalLinks = false;'' to Local settings.php


===images===
===Social networking bookmarks===
Shrink Images into thumbnail using Photoshop on Netlab's remote desktop later:
http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>
 
===Version 1.10===
Upgrading to Media Wiki 1.10 version also allows Private pages to viewed by restricted members.
Data and files would need to be copied over to the new wiki.
 
===Search and bibtex===
Optional to copy page source from:<br>
http://netlab.caltech.edu/pubs_search.php<br>
and put all papers into an array for bibtex and searching...
(See array set up by David Wei and Lachlan Andrew and Hana at Netlab website)


* Image:Movie2005.jpg
Some one can copy code over and insert it into this wiki if this is worthwhile and not time consuming
*Image from http://www.cds.caltech.edu/doyle-fest/graph.jpg and place it into "Group" page, under "Other collaborators"


==Old webpages==
==Old webpages==
Line 54: Line 88:
http://www.cds.caltech.edu/~doyle/
http://www.cds.caltech.edu/~doyle/


==Hana's log hours==
===new pages copied from old pages===
{| border=1
The following pages has had text copied from Doyle's old website then reformatted and citations/links added.
!Date
 
!Time
Does someone copy over old external links and files/slides next?
!Hrs
Papers/Books have been mostly uploaded to wiki (and also appears on Papers by year)
 
{| border="1"
!Wiki page
!Most Content from old website page
|-
|-
|7/8/07 Lun helped!
|[[Complexity and robustness]]|| <http://www.cds.caltech.edu/~doyle/SFI_robustness/>
|2-6.30pm
|4.5
|-
|-
|7/9/07
|[[Complex_networks]]|| <http://www.cds.caltech.edu/~doyle/CmplxNets/>
|10am-1pm
|3
|-
|-
|7/15/07 Lun helped
|[[J. Doyle’s Bio]] <br> [[J. Doyle's Bio Athletics]]
|12-3.30pm
|<http://www.cds.caltech.edu/~doyle/CV.html><br>
|3.5
<http://www.cds.caltech.edu/~doyle/CVath.html> <br>
text and photos copied to  (only a few things listed for period 2000-2008 in Aug-Jul 2008)
|}
|}
Waiting on Betta at Netlab to arrange payment account?

Latest revision as of 05:41, 28 August 2008

Homepage

  • to add favourite current papers & projects.

other pages

Papers:

  • tidy up topics and add introductions (definitions and Doyle's group approach to each topic)
  • check if papers listed on papers by topic are relevant or need updating
  • ensure papers appearing by topic also appear on papers by year


Group:

  • to update personel present and past

Research and J. Doyle’s Bio:

  • to expand and get edited by Prof. Doyle.
  • Group to contribute

Physiology page set up but need more content and more papers!!!

Network architecture and protocols needs editing - too long text and too general? Needs add interest with diagrams etc.,

Complex networks - add newer papers?

Add pages or create category for public website?

Find location for: <www.nsf.gov/attachments/111101/public/Doyle1NSFBio_HardLimits.ppt>

Meetings, Calendar, Tips maintenance

Students/Prof Doyle to edit/add to useful stuff to:

Tips: Research papers, Publishing and Other Trivia

Calendar to add Bio and Physio meetings at Caltech and related conferences, continue updating relevant CDS course links

Group Meetings- keep using it for group meetings

Special:Allpages

See section below new pages copied from old pages

overall

Website needs

  • have Group members update the wiki!
  • more logical structure,
  • definition of terminology
  • define how Prof Doyle's group approaches each topic
  • to define and select "categories".
  • structure sections to public wanting to get into these areas of research
  • consider making website easier to find now that draft is almost done!!! eg redirect or ...

Links / Access

  • to add many more internal wiki links and add "categories"
  • to add "Presentations" (Hana/Lun adjusted LocalSettings.phpto allow ppt or pdf upload)
  • to update File permisssions last set by Lachlan and Lun July 2007.

Set up accounts:

  • login then to set up separate username/passwords

and check pages: Special pages:User list; Special pages: User rights management

    • someone else in Doyle's group need to take over setting up accounts

images

  • add more diagrams and images!

Other features that could be added to wiki

Case Sensitivity

To make page titles and usernames case-sensitive, added $wgCapitalLinks = false; to Local settings.php

Social networking bookmarks

http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>

Version 1.10

Upgrading to Media Wiki 1.10 version also allows Private pages to viewed by restricted members. Data and files would need to be copied over to the new wiki.

Search and bibtex

Optional to copy page source from:
http://netlab.caltech.edu/pubs_search.php
and put all papers into an array for bibtex and searching... (See array set up by David Wei and Lachlan Andrew and Hana at Netlab website)

Some one can copy code over and insert it into this wiki if this is worthwhile and not time consuming

Old webpages

http://www.cds.caltech.edu/~doyle/home.htm

http://www.cds.caltech.edu/~doyle/

new pages copied from old pages

The following pages has had text copied from Doyle's old website then reformatted and citations/links added.

Does someone copy over old external links and files/slides next? Papers/Books have been mostly uploaded to wiki (and also appears on Papers by year)

Wiki page Most Content from old website page
Complexity and robustness <http://www.cds.caltech.edu/~doyle/SFI_robustness/>
Complex_networks <http://www.cds.caltech.edu/~doyle/CmplxNets/>
J. Doyle’s Bio
J. Doyle's Bio Athletics 		<http://www.cds.caltech.edu/~doyle/CV.html>

<http://www.cds.caltech.edu/~doyle/CVath.html>
text and photos copied to (only a few things listed for period 2000-2008 in Aug-Jul 2008)

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