Modeling Biological Systems

Slides

• Architecture and Layering in Biology
• Minimal Cell Model

Reading

• Rule-Based Modeling of Biochemical Systems with BioNetGen, Faeder, Blinov and Hlavacek
• Simulation of large-scale rule-based models, Colvin et al.
• The Complexity of Cell Signaling and the Need for a New Mechanics, Hlavacek and Faeder
• Rules for Modeling Signal-Transduction Systems, Hlavacek et al.
• Mathematical and Computational Models of Immune-Receptor Signalling, Goldstein et al.