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John C. Doyle 道耀

Jean-Lou Chameau Professor
of Control and Dynamical Systems
Electrical Engineering
and BioEngineering

Division of Engineering and Applied Science
California Institute of Technology

Contact

Videos with overview of research

Aimed to be accessible to a general audience with an emphasis on neuroscience, biology, and medicine. Not much math. Almost.

Dropbox folder

It's not very well organized but there are a variety of subfolders with videos, slides, and papers. Download the videos or they will run in preview mode and terminate early.

My latest movie files are in the folder 0.2.NewBE are:

0.Readme.NeuroExpmnts.docx (not a movie)… a document that describes some simple experiments that will be leveraged to explain layering, virtualization, tradeoffs, etc…

1.FragileWebinarUpdate.mp4 (An updated version of part of a webinar on fragility with Martin Rees, Terry Sejnowski, and Pat Churchland at UCSD and that I remade for Caltech’s BE167 class this term.) This talks broadly about laws and layers in cells, internet, brains, language, and the (in)justice system, with an “architectural” analysis of the 14th amendment and infectious hijacking by viruses, bad memes, bad law, etc… this is hopefully fun but motivates the big ideas…

2.BE167Neuro.mp4 (another short movie on recent work on sensorimotor control for BE167 …this is a bit more technical)

3.BEFacNeuro.mp4 (some overlap but more on a bunch of simple neuro experiments that can be done easily at home with minimal equipment but illustrate important general ideas…)

In the subfolder Rants, these experiments are described in 1.NeuroExpmnts.docx and there is a file called 2.RantOnSustain.docx that is as named… it talks about the problems of sustainable infrastructure and motivates SLS… 3.RantOnAI4Ctrl.docx is about how AI and control interact though it is out of date….

A broader laws/layers/levels story is started in the folder 0.1.NewIntro and the rest of the folders have hopefully descriptive names. Overall, neuro and in particular sensorimotor control is a most recent case study but there is lots of (some older) biology and medicine… the newest topic is social architecture which is in various places … (and eager to get more feedback on all of this.)

Brief Bio

John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.

Research is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems with sparse, saturating, delayed, quantized, uncertain sensing, communications, computing, and actuation. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).

Prizes, awards, records, championships include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (twice 1998, 1999), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.

Old NIH Style Bio

(Old) Athletics Bio

Old Application Papers

For recent theory papers see Nikolai Matni

For fairly complete list of references see Google Scholar

Neuroscience and Machine Learning : Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, Neural Computation, 2017

Education and Neuroscience: Tutorial on education for Conference on Decision and Control, 2016

Medicine: Robust efficiency and actuator saturation explain healthy heart rate control and variability‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), P Natl Acad Sci USA 111 (33)

Medicine: Sepsis: Something Old, Something New, and a Systems View J Crit Care. (2012)

Universal architectures: Architecture, constraints, and behavior, JC Doyle, MC Csete, P Natl Acad Sci USA, vol. 108, Sup 3 15624-15630

Biology: Gycolytic oscillations and limits on robust efficiency, FA Chandra, G Buzi, JC Doyle Science 333(6039):187-192, July 2011

Turbulence: Amplification and nonlinear mechanisms in plane Couette flow., D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle. Physics of Fluids v23:6:065108 (2011)

Biology: Analysis of autocatalytic networks in biology, G Buzi, U Topcu, J Doyle, Automatica 47:1123-1130 (2011)

Earthquakes: The magnitude distribution of earthquakes near Southern California faults Page, Alderson, and Doyle JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 116, (2011)

Physics: On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements, H Sandberg, JC Delvenne, JC Doyle, IEEE Trans Auto Control, v56:2, 293-308 (2011)

Wireless: Cross-layer design in multihop wireless networks, L Chen, SH Low, and JC Doyle, Computer Networks 55:480–496 (2011)

Circuits: Solving Large-Scale Hybrid Circuit-Antenna Problems Lavaei, Babakhani, Hajimiri and Doyle, IEEE Transactions on Circuits and Systems I, vol. 58, no. 2, pp. 374-387, Feb. 2011.

Complexity: Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures Alderson and Doyle, IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS, VOL. 40, NO. 4, JULY 2010

Internet: Mathematics and the Internet: A Source of Enormous Confusion and Great Potential Willinger, Alderson, and Doyle, Notices of the AMS Volume 56, Number 5 (2009)

Fire: Fire in the Earth System, Science 324, 481 (2009)

Biology: Robustness of Cellular Functions, Stelling, Sauer, Szallasi, Doyle, and Doyle, Cell, 2004

Biology: Reverse Engineering of Biological Complexity, Csete and Doyle, Science, (2002)

More Papers

News

Dennice Gayme (Hopkins) named Carol Linde Croft Faculty Scholar.

Na (Lina) Li (Harvard) gets NSF CAREER and AFOSR YI awards.

Javad Lavaei (Berkeley) gets SIAM Control and Systems Theory Prize and AACC Eckman, and too many other awards to list.

Old: Discover magazine "This man wants to control the internet" by Carl Zimmer, Discover magazine, 2008.

Newer: Blog and new videos Follow link to dropbox folder with accessible introductory videos and case studies in neuroscience, cell biology, and medical physiology. Our you can go directly to the dropbox folder or see above video lists.

Please download the .mp4 files from the dropbox, otherwise they will run in preview mode, which limits the time.