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<big>'''MediaWiki has been successfully installed.'''</big>


==About Wiki==
==About Wiki==
For version information, see [[Special:version]].
<big>'''MediaWiki has been successfully installed.'''</big> For version information, see [[Special:version]].


[http://www.mediawiki.org/wiki/MediaWiki About media Wiki]
[http://www.mediawiki.org/wiki/MediaWiki About media Wiki]


In July 2007, this wiki was initially installed by Lun Li and the source files are mounted at IP:
In July 2007, this wiki was initially installed by Lun Li, onto IP: ?? and can be edited via IP:??


The wiki pages were initally set up by Prof J Doyle, Lun Li, Lijun Chen, Hana and Lachlan Andrew, with assistance from CDS
The wiki pages were initally set up by Prof J Doyle, Lun Li, Lijun Chen, Hana and Lachlan Andrew, with assistance from CDS


This wiki is to document Prof. J. C. Doyle & his groups's research activities.
This wiki is to document Prof. J. C. Doyle & his groups's research activities.
Line 18: Line 17:


==Using Wiki==
==Using Wiki==
Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
<big>'''MediaWiki has been successfully installed.'''</big>
 
*Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.


* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [http://www.mediawiki.org/wiki/Help:Contents MediaWiki Help list]
* The menus on the left are controlled by [[Mediawiki:Sidebar]]


==Editing tips for Wiki==
==Editing Wiki==
*[http://www.mediawiki.org/wiki/Help MediaWiki Help list]
* Editing this wiki has been restricted to those logged in with an existing "User account", where the "edit tabs" at the top of the page should appear after log-in.
*[http://www.mediawiki.org/wiki/Help:Editing_pages Editing pages]
** You can edit a page or section on a page by clicking on "edit" tabs.
**After typing your updates to the editing box on any page, use the "show preview" button to preview your editing/links!
*Useful URL's for wiki markup/editing tips:
**<http://www.mediawiki.org/wiki/>:
**<http://meta.wikimedia.org/wiki/>
**[http://www.mediawiki.org/wiki/Help MediaWiki Help list]
**[http://www.mediawiki.org/wiki/Help:Editing_pages Editing pages MediaWiki Help Editing pages]


==SysOps / Wiki admin tips==
==Sysops topics==
* Editing common CSS definitions, see notes on MediaWiki:Common.css
*More useful links for Sysops topics already listed in sections above.
* The sidebar can be edited at [[MediaWiki:Sidebar]].   
*The source files for this wiki (folder name '''???''') are mounted onto '''file server:???''' and edited/hosted via '''web server: at CDS, Caltech.???''
For instructions, see [http://www.mediawiki.org/wiki/Manual:Navigation_bar Mwiki manual on Navigation bar]
* This wiki URL is <http://www.cds.caltech.edu/~doyle2/wiki/> 
* The common CSS definitions within this wiki can be edited at [[MediaWiki:Common.css]]
* Sidebar can be edited at [[MediaWiki:Sidebar]].  For instructions, see <http://www.mediawiki.org/wiki/Manual:Navigation_bar>.
* To change an Infobox template, create a page in the '''Template:''' namespace.
* To change an Infobox template, create a page in the '''Template:''' namespace.
* Redirect page to another page:
*See [[Windows management servers]] code, to find out how to paste contents from small page onto a larger page.
*Starting a new page labelled <nowiki>[[Private: ___]]</nowiki> denotes private page requiring restricted password
 
===Linux commands===
*To view instructions on changing file permissions on Unix, type '''man chmod''' on the Linux command line. Then admin can choose which files are w= writable, R=readable etc by admin or group. If in doubt ask Lun or CDS sysadmin!
*ssh to website, then type in '''cd ..''' enter then '''ln -s hanas_site/filename.php''' creates symbolic link to Hana's Netlab website stored at CS, Caltech.
*For linux users, a short summary of usage can be obtained by typing
  <command> --help
into the linux command line.
 
===Special pages===
*[[Special:Specialpages]] lists links to pages important to managing this wiki, for example,
**[[Special:Userlogin|to log-in/create account]]
**[[Special:Version|to check information about this mediawiki/MySQL/PHP behind this website]]
**[[Special:Recentchanges|to view/control recent changes]]
 
===Error messages===
* 404 Not Found is an error message when non-existent URL is typed into the browser, ie webpage not found
* 403 Access forbidden, ie when user is not allowed access to some pages
 
===Create account / Restricting User Level===
Accounts for this wiki have been given mostly to [[Group|Prof. Doyle's group]] and some [http://netlab.caltech.edu/people.php Netlab members].
 
Editing has been limited to users logged in existing user account and user levels have been restricted in some accounts.
 
See also section above '''Linux commands''', on ''changing file permissions''!
 
[[Special:Specialpages]] has pages important to managing user accounts, for example
*[[Special:Userlogin|to log-in/create account]]
**On this wiki, login as a ''Sysops'' user => [[Special:Specialpages|''Special pages'']] => [[Special:Userlogin|"Login/Create Account"]] => ''Create Account'', fill in the fields.
*[[Special:Blockip|block user]]
 
Useful instructions from <http://meta.wikimedia.org/wiki/> and <http://www.mediawiki.org/wiki/>:
*[http://meta.wikimedia.org/wiki/MediaWiki_FAQ#User_administration Administering user rights]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_administrate.2Fmanage_user_rights.3F Managing/administering/restricting user rights]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_reset_a_password.3F Reset password]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_remove_the_article.2Fedit_etc_tabs_for_users_who_are_not_logged_in.3F Removing tabs to users not logged in]
 
 
==Support==
*[[Main Page#Contact|Contact]] webmasters: Lun Li, John Doyle, Gloria Bain at CDS
 
or [http://netlab.caltech.edu/contact.php Hana & Lachlan at Netlab, CS]
 
or [http://www.cds.caltech.edu/contact/  contact CDS]
 
===Searching literature===
*[http://library.caltech.edu/ Caltech Library]
*[http://ieeexplore.ieee.org/Xplore/dynhome.jsp IEEE Explore Library]
*[http://scholar.google.com/ Google scholar]
*[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed NCBI Pubmed search]
 
===Searching J Doyle's literature on this wiki===
*Click on sidebar "Papers"
*Click on sidebar "Special pages" and then click on "categories", then select "papers".
*Click on "all pages" and then select "images" then click "go".
==John Doyle's other homepages==
*<http://www.cds.caltech.edu/~doyle/>
*<http://www.cds.caltech.edu/~doyle/home.htm>
 


On "Old wiki page" type in #Redirect <nowiki>[[New page link ]]</nowiki>
===Restricting  - file permissions and User account levels===
*Admin file permissions


To view instructions on changing file permissions on Unix, type in "man chmod" on the Linux command line. Admin can choose which files are w= writable, R=readable etc by admin or group. If in doubt ask Lun or CDS sysadmin.


*Admin creating accounts:
**[http://meta.wikimedia.org/wiki/MediaWiki_FAQ#Basic_User_Account_Management.3F Managing User accounts]
**[http://www.mediawiki.org/wiki/Manual:User_rights User levels]
**On this wiki, login as a ''Sysops'' user => ''Special pages'' => "Login/Create Account" => ''Create Account'', fill in the fields.


*[[To Do]] lists items to be updated by end of Sept 2007!
**Instructions for removing 'edit' tabs for users not logged in![http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_remove_the_article.2Fedit_etc_tabs_for_users_who_are_not_logged_in.3F]


==Upload limit==
==Upload file==
===Upload limit===
*[http://www.mediawiki.org/wiki/Manual:Configuring_file_uploads#Set_maximum_size_for_file_uploads Know Media Wiki upload limit 2MB]
*[http://www.mediawiki.org/wiki/Manual:Configuring_file_uploads#Set_maximum_size_for_file_uploads Know Media Wiki upload limit 2MB]


===Other upload tips===
*pdf, ppt, jpg are formats can now be uploaded to this wiki, after implementing relevant code in LocalSettings.php
* Once the file has been uploaded, remember to add '''source''' details on the upload page,  and ensure it does not violate copyright and related issues!
==Images==
===Thumbnails===
==Images==
==Images==


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* edit code in file below, as instructed  
* edit code in file below, as instructed  
   ...\mwiki\localsettings.php  
   ...\mwiki\localsettings.php  
* ensure the ImageMagick version that you choose to download is compatible with version listed above
* ensure the ImageMagick version that you choose to download is compatible with [[Special:Version|this wiki version]] listed above
* create folder "ImageMagick" on CDS server
* create folder "ImageMagick" on CDS server IP: ??? C:\program files
* onto this ImageMagick folder, download [http://www.imagemagick.org/download/www/binary-releases.html ImageMagick]
* onto this ImageMagick folder, download [http://www.imagemagick.org/download/www/binary-releases.html ImageMagick]


Line 71: Line 142:
* [http://www.mediawiki.org/wiki/Help:Images MediaWiki:Help Adding images]
* [http://www.mediawiki.org/wiki/Help:Images MediaWiki:Help Adding images]


==Support==
*[[Main Page#Contact|Contact]] webmasters: Lun Li, John Doyle, Gloria Bain at CDS


or [http://netlab.caltech.edu/contact.php Hana & Lachlan at Netlab, CS]
===Find images in wiki===
To lists all the image files (jpg, pdf, etc) on this wiki, click on [[Special:Specialpages|Special pages]] on sidebar, then select [[Special:Allpages|All pages]], then on this page select '''image''' in the '''Namespace''' box (pull down menu), and lastly select '''Go'''.
 
==Navigation==
===Creating a redirect===
Re-directs are useful for searching for specific page by various keywords or other alternative names.
 
To create a redirect, you must start a new page with the name you want to direct from. Do this by typing the desired name into the search box, or straight into the URL (methods described on Help:Starting a new page)
 
For the text of the new page, enter the following:
 
  #REDIRECT <nowiki>[[pagename]]</nowiki>
 
where pagename is the name of the page you want to redirect users to.
<!--<nowiki>...</nowiki> tags are not part of the redirect syntax; they prevent [[foo]] from showing up as a link-->
 
You can use the 'preview' button, to check that you have entered the correct page name (Generally you will be redirecting to an existing page name, so the link should be blue, not red)
 
* Redirect page to another page: On "Old wiki page" type in #REDIRECT <nowiki>[[New page link ]]</nowiki>
 
===Categories===
*<nowiki>[[Category:___]]</nowiki> files page under new or old category, very useful for grouping pages by category!
===Side bar===
[[Special:Categories]], [[Special:All articles]], '''Wiki help''' was added to side bar to list all pages by category and by article - quicker for user to find specific pages.
 
==Other features that were added to WiL wiki==
===Case Sensitivity===
To make page titles and usernames case-sensitive, added ''$wgCapitalLinks = false;'' to Local settings.php


or [http://www.cds.caltech.edu/contact/ contact CDS]
===Social networking bookmarks===
http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>


===Searching literature===
==Searching literature==
*[http://netlab.caltech.edu/pubs_search.php Netlab papers]
*[http://library.caltech.edu/ Caltech Library]
*[http://library.caltech.edu/ Caltech Library]
*[http://ieeexplore.ieee.org/Xplore/dynhome.jsp IEEE Explore Library]
*[http://ieeexplore.ieee.org/Xplore/dynhome.jsp IEEE Explore Library]
*[http://scholar.google.com/ Google scholar]
*[http://scholar.google.com/ Google scholar]
*[http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed NCBI Pubmed search]
===Searching J Doyle's literature on this wiki===
*Click on sidebar "Papers"
*Click on sidebar "Special pages" and then click on "categories", then select "papers".
*Click on "all pages" and then select "images" then click "go".
==John Doyle's other homepages==
*<http://www.cds.caltech.edu/~doyle/>
*<http://www.cds.caltech.edu/~doyle/home.htm>

Revision as of 23:30, 16 August 2008

About Wiki

MediaWiki has been successfully installed. For version information, see Special:version.

About media Wiki

In July 2007, this wiki was initially installed by Lun Li, onto IP: ?? and can be edited via IP:??

The wiki pages were initally set up by Prof J Doyle, Lun Li, Lijun Chen, Hana and Lachlan Andrew, with assistance from CDS

This wiki is to document Prof. J. C. Doyle & his groups's research activities.

2007-2008 Wiki admin:

Using Wiki

MediaWiki has been successfully installed.

  • Consult the User's Guide for information on using the wiki software.

Editing Wiki

Sysops topics

Linux commands

  • To view instructions on changing file permissions on Unix, type man chmod on the Linux command line. Then admin can choose which files are w= writable, R=readable etc by admin or group. If in doubt ask Lun or CDS sysadmin!
  • ssh to website, then type in cd .. enter then ln -s hanas_site/filename.php creates symbolic link to Hana's Netlab website stored at CS, Caltech.
  • For linux users, a short summary of usage can be obtained by typing
  <command> --help

into the linux command line.

Special pages

Error messages

  • 404 Not Found is an error message when non-existent URL is typed into the browser, ie webpage not found
  • 403 Access forbidden, ie when user is not allowed access to some pages

Create account / Restricting User Level

Accounts for this wiki have been given mostly to Prof. Doyle's group and some Netlab members.

Editing has been limited to users logged in existing user account and user levels have been restricted in some accounts.

See also section above Linux commands, on changing file permissions!

Special:Specialpages has pages important to managing user accounts, for example

Useful instructions from <http://meta.wikimedia.org/wiki/> and <http://www.mediawiki.org/wiki/>:


Support

  • Contact webmasters: Lun Li, John Doyle, Gloria Bain at CDS

or Hana & Lachlan at Netlab, CS

or contact CDS

Searching literature

Searching J Doyle's literature on this wiki

  • Click on sidebar "Papers"
  • Click on sidebar "Special pages" and then click on "categories", then select "papers".
  • Click on "all pages" and then select "images" then click "go".

John Doyle's other homepages




Upload file

Upload limit

Other upload tips

  • pdf, ppt, jpg are formats can now be uploaded to this wiki, after implementing relevant code in LocalSettings.php
  • Once the file has been uploaded, remember to add source details on the upload page, and ensure it does not violate copyright and related issues!



Images

Thumbnails

Images

Thumbnails

To install software to create thumbnails on this mwiki,

  ...\mwiki\localsettings.php 
  • ensure the ImageMagick version that you choose to download is compatible with this wiki version listed above
  • create folder "ImageMagick" on CDS server IP: ??? C:\program files
  • onto this ImageMagick folder, download ImageMagick

Add Images

 ...\mwiki\localsettings.php

was edited to enable file uploading from the Toolbox on the Sidebar.


Find images in wiki

To lists all the image files (jpg, pdf, etc) on this wiki, click on Special pages on sidebar, then select All pages, then on this page select image in the Namespace box (pull down menu), and lastly select Go.

Navigation

Creating a redirect

Re-directs are useful for searching for specific page by various keywords or other alternative names.

To create a redirect, you must start a new page with the name you want to direct from. Do this by typing the desired name into the search box, or straight into the URL (methods described on Help:Starting a new page)

For the text of the new page, enter the following:

  #REDIRECT [[pagename]]

where pagename is the name of the page you want to redirect users to.

You can use the 'preview' button, to check that you have entered the correct page name (Generally you will be redirecting to an existing page name, so the link should be blue, not red)

  • Redirect page to another page: On "Old wiki page" type in #REDIRECT [[New page link ]]

Categories

  • [[Category:___]] files page under new or old category, very useful for grouping pages by category!

Side bar

Special:Categories, Special:All articles, Wiki help was added to side bar to list all pages by category and by article - quicker for user to find specific pages.

Other features that were added to WiL wiki

Case Sensitivity

To make page titles and usernames case-sensitive, added $wgCapitalLinks = false; to Local settings.php

Social networking bookmarks

http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>

Searching literature