Papers

Needs intro...

Format?

Title, Author, Journal, Month, Year.

or 2000-2007 1990-1999 1980-1989

OR by topic?

Maybe use this page to link to other paper pages eg Papers:2000-2005, Papers: Systems Biology

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2007

Journals

Diversity of graphs with highly variable connectivity

David Alderson and Lun Li

PHYSICAL REVIEW E 75, 046102, 2007.

Conferences

Optimization Based Rate Control for Multi-cast with Network Coding

Lijun Chen, Tracey Ho, Steven H. Low, Mung Chiang and John C. Doyle.

in Proceedings of IEEE Infocom, Anchorage, Alaska, May 2007.

Layering as optimization decomposition,

Mung Chiang and Steven H. Low and A. Robert Calderbank and John C. Doyle

in Proceedings of the IEEE, Jan 2007.

2006

Journals

Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System

Hiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C Doyle, Irina Grigorova, Carol A. Gross, Mustafa Khammash,

PLoS Computational Biology, early on-line release. (april 13, 2006)

Towards a Theory of Scale-Free Graphs: Definition, Properties, and Implications

L. Li, D. Alderson, J. C. Doyle and W. Willinger,

Internet Mathematics, 2(4), p 431-523, Mar. 2006.

Conferences

Cross-layer congestion control, routing and scheduling design in ad hoc wireless network,

L. Chen and S. H. Low and M. Chiang and J. C. Doyle,

in Proceedings of IEEE Infocom, Barcelona, Spain, Apr 2006.

Discovering Dependencies for Network Management,

Victor Bahl, Paul Barham, Richard Black, Ranveer Chandra, Moises Goldszmidt, Rebecca Isaacs, Srikanth Kandula, Lun Li, John MacCormick, David A. Maltz, Richard Mortier, Mike Wawrzoniak, and Ming Zhang,

In Proc. of the ACM SIGCOMM Hot Topics in Networks (HotNets) 2006.

Book

Dual scheduling algorithm in a generalized switch: asymptotic optimality and throughput optimality,

L. Chen and S. H. Low and J. C. Doyle,

in High-Performance Packet Switching Architectures, Itamar Elhanany and Mounir Hamdi (Eds), Springer, Jun 2006.

2005

Journals

Understanding Internet Topology: Principles, Models, and Validation,

D. Alderson, L. Li, W. Willinger, J. C. Doyle,

IEEE/ACM Transaction on Networking, 13(6), Dec. 2005. 1.2MB

The 'Robust, Yet Fragile' Nature of the Internet

J.C. Doyle, D. Alderson, L. Li, S. H. Low, M. Roughan, S. Shalunov, R. Tanaka and W.Willinger,

Proc. of the. National Academy of Sciences, Oct.4 2005.

FAST TCP: From Theory to Experiments,

C. Jin and D. X. Wei and S. H. Low and G. Buhrmaster and J. Bunn and D. H. Choe and R. L. A. Cottrell and J. C. Doyle and W. Feng and O. Martin and H. Newman and F. Paganini and S. Ravot and S. Singh,

IEEE Network, 19(1):4-11, Jan/Feb 2005.(638k)

Cross-layer optimization in TCP/IP networks

J. Wang, L. Li, S. H. Low and J. C. Doyle.

IEEE/ACM Transactions on Networking, 13(3):582-568, Jun 2005 (409k)

Congestion control for high performance, stability and fairness in general networks

F. Paganini, Z. Wang, J. C. Doyle and S. H. Low.

IEEE/ACM Transactions on Networking, 13(1):43-56, Feb 2005 (444k)

An Optimation-based Approach to Modeling Internet Topology

D. Alderson, W. Willinger, L. Li, and J. Doyle,

Telecommunications Planning: Innovations in Pricing, Network Design and Management. S. Raghavan and G. Anandlingham, eds. Springer. 2005.

Conferences

Joint congestion control and media access control design for wireless ad hoc networks

Lijun Chen, Steven H. Low and John C. Doyle.

in Proceedings of IEEE Infocom, Miami, FL, Mar 2005 (193k).

Robust Yet Fragile Nature of the Internet

J. C. Doyle, D. Alderson, L. Li, S. H. Low, M. Roughan, S. Shalunov, R. Tanaka and W. Willinger

in Proceedings of the National Academy of Sciences, 2005 (635k)

Towards a theory of scale-free graphs: definitions, properties, and implications

L. Li, D. Alderson, J. C. Doyle and W. Willinger

Internet Mathematics, 2005 (909k).

Optimization model of internet protocols NEED TO COPY onto Netlab website!

Steven H. Low, John Doyle, Lun Li, Ao Tang and Jiantao Wang

in Proceedings of SIGMETRICS, 2005.

• Congestion control for high performance, stability, and fairness in general networks.

Fernando Paganini, Zhikui Wang, John C. Doyle, Steven H. Low

2004

Journals

Methodological Frameworks for Largescale Network Analysis and Design

Antonis Papachristodoulou, Lun Li and John C. Doyle

Computer Communication Review, 34(3), Jul 2004 (566k)

Metabolic Syndrome and Robustness Tradeoffs,

Kitano, H., Oda, K., Kimura, T., Matsuoka, Y., Csete, M., Doyle, J., Muramatsu, M..

Diabetes 53, S6-S15, 2004

Evolving a lingua franca and associated software infrastructure for computational systems biology: theSystemsBiologyMarkupLanguage(SBML) project,

M. Hucka; A. Finney; B.J. Bornstein; S.M. Keating; B.E. Shapiro; J. Matthews; B.L. Kovitz; M.J. Schilstra; A. Funahashi; J.C. Doyle; and H. Kitano

IEE Systems Biology. 1:41-53, 2004

Conferences

Analysis of TCP/AQM Protocol Models in the Form of Functional Differential Equations

A. Papachristodoulou, J. C. Doyle and Steven H. Low.

in Proceedings of IEEE Conference on Decision and Control (CDC), Paradise Island, Bahamas, Dec 2004 (140k)

A First-principles Approach to Understanding the Internet's Router-level Topology

Lun Li, David Alderson, W. Willinger and John C. Doyle

in Proceedings of ACM SIGCOMM, Portland, OR, Aug 2004 (1.5MB)

Winner of Best Student paper award

The Role of Optimization in Understanding and Modeling Internet Topology,

D. Alderson, W. Willinger, L. Li and J. C. Doyle,

In Proceedings of the 7th INFORMS Tele-communications Conference, 2004.

More 'Normal' Than Normal: Scaling Distributions and Complex Systems,

W. Willinger, D. Alderson, J. C. Doyle and L. Li,

Winter Simulation Conference, 2004.

A Pragmatic Approach to Dealing with High-variability in Network Measurements,

W. Willinger, D. Alderson, and L. Li,

In Proceedings of the ACM Sigcomm IMC, 2004.

2003

Journals

Linear stability of TCP/RED and a Scalable Control

S. H. Low, F. Paganini, J. Wang and J. C. Doyle

Computer Networks Journal, 43(5):633-647, Dec 2003 (465k).

• Computational complexity of μ calculation

R.P. Braatz, P. M. Young, J. C. Doyle, M. Morari Automatic Control, IEEE Transactions 39(5):1000-1002, May 1994.

Conferences

• FAST Kernel: Background Theory and Experimental Results

C. Jin, D. X. Wei, S. H. Low, G. Buhrmaster, J. Bunn, D. H. Choe, R. L. A. Cottrell, J. C. Doyle, H. Newman, F. Paganini, S. Ravot and S. Singh.

in Presented at International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet), CERN, Geneva, Switzerland, 3-4 Feb 2003 (431k)

url = "http://netlab.caltech.edu/publications/pfldnet03.pdf"

• A Control Theoretical Look at Internet Congestion Control

F. Paganini, J. C. Doyle and S. H. Low.

in Multidisciplinary Research in Control: The Mohammed Dahleh Symposium 2002. Springer Lecture Notes in Control and Information Sciences, Vol. 289 L. Giarre' and B. Bamieh (eds.), Springer-Verlag, 2003 (283k).

Can Shortest Path Routing and TCP Maximize Utility

J. Wang, L. Li, S. H. Low and J. C. Doyle.

in Proceedings of IEEE Infocom, San Francisco, CA, Apr 2003 (157k)

A new TCP/AQM for Stable Operation In Fast Networks

F. Paganini, Z. Wang, S. H. Low and J. C. Doyle.

in Proceedings of IEEE Infocom, San Francisco, CA, Apr 2003 (1.4MB)

Book

• Robustness and the Internet: Theoretical foundations

John C. Doyle, Jean Carlson, Steven H. Low, Fernando Paganini, Glenn Vinnicombe, Walter Willinger, Jason Hickey, Pablo Parrilo and Lieven Vandenberghe.

in Robust design: a repertoire from biology, ecology, and engineering. E. Jen (eds.), Oxford University Press, 2003

2002

Journals

Internet Congestion Control

S. H. Low, F. Paganini and J. C. Doyle

IEEE Control Systems Magazine, 22(1):28-43, Feb 2002 (225k)

• Reverse Engineering of Biological Complexity

Marie E. Csete, John C. Doyle

Science 1 295(5560):1664 - 1669, March 2002

Robustness as a measure of plausibility in models of biochemical networks (abstract),

Morohashi, M., Winn, A. E., Borisuk, M. T., Bolouri, H., Doyle, J., and Kitano, H.

J. Theor. Biol. 216, 19-30, 2002.

Conferences

A new TCP/AQM for Stability and Performance in Fast Networks, Fernando Paganini, Zhikui Wang, Steven H. Low and John C. Doyle

in Proceedings of 39th Annual Allerton Conference on Communication, Control, and Computing, Monticello, IL, Oct 2002 (1.36M)

Dynamics of TCP/RED and a Scalable Control

S. H. Low, F. Paganini, J. Wang, S. Adlakha and J. C. Doyle.

in Proceedings of IEEE Infocom, New York, NY, Jun 2002 (435k).

Extensions of Jump Markov System Estimation,

K. Sun, L. Li, G. Panayotopoulos and A. Packard,

American Control Conference, 2002.

[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11928498&dopt=Abstract The ERATO Systems Biology Workbench: enabling interaction and exchange between software tools for computational biology (Abstract)]

Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J., and Kitano,H.

in Proceedings of Pac Symp Biocomput. 2002, 450-61, 2002.

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• A New TCP Congestion Control with Empty Queues and Scalable Stability

F. Paganini, S. H. Low, Z. Wang, S. Athuraliya and J. C. Doyle.

2002

2001

Conferences

Scalable Laws for Stable Network Congestion Control

Fernando Paganini, J. C. Doyle and S. H. Low.

in Proceedings of IEEE CDC, Orlando, FL, Dec 2001 (475k).

• Linear stability of TCP/RED and a Scalable Control (invited)

S. H. Low, F. Paganini, J. Wang, S. Adlakha and J. C. Doyle.

in Proceedings of Allerton Conference on Communication, Control, and Computing, Monticello, IL, Oct 2001.

Older papers

1990-1999 1977-1989

Books

• Robust and optimal control

K Zhou, JC Doyle, K Glover - 1996 - Prentice-Hall, Inc. NJ, USA Authors, Kemin Zhou, John C. Doyle, Keith Glover, Publisher, Prentice-Hall, Inc. Collaborative Colleagues: John C. Doyle: Bruce A. Francis. Tryphon T. Georgiou. Keith Glover. Lun Li. Steven H. Low. Matthew Philip Newlin. Fernando Paganini.

• Essentials Of Robust Control.

Kemin Zhou, John C. Doyle, September, 1997 by Prentice Hall. Copyright 1998, pp 411.

Journal

• State-space formulae for all stabilizing controllers that satisfy and H∞norm bound and relations to risk sensitivity

Keith Glover John C. Doyle Systems & Control Letters 11(3):167-172 September 1988

other

• Analysis and Synthesis Toolbox

GJ Balas, JC Doyle, K Glover, A Packard, R Smith ? The MathWorks Inc, 1996 - mathworks.com

• Linear Control Theory with an ${\bf H}_\infty $ Optimality Criterion

Bruce A. Francis and John C. Doyle SIAM Journal on Control and Optimization SICON 25(4): 815-844, 1987 Society for Industrial and Applied Mathematics