Networking

Internet networking...

2007

Layering as optimization decomposition: A Mathematical Theory of Network Architectures (invited),
Mung Chiang, Steven H. Low, A. Robert Calderbank, John C. Doyle
in Proc. IEEE 95(1) Jan 2007. (3.2MB)

Optimization Based Rate Control for Multi-cast with Network Coding
Lijun Chen, Tracey Ho, Steven H. Low, Mung Chiang and John C. Doyle.
in Proc. IEEE Infocom, Anchorage, Alaska, May 2007. (191K)

Opportunistic Source Coding for Data Gathering in Wireless Sensor Networks Tao Cui, Lijun Chen, Tracey Ho, Steven H. Low and Lachlan H. Andrew in Proc. IEEE MASS (Mobile Ad-hoc and Sensor Systems), Pisa, Italy, Oct 2007.

Can complexity science support the engineering of critical network infrastructures?
Alderson, D.L. and Doyle, J.C.;
IEEE International Conference on Systems, Man and Cybernetics, pp 44 - 51 , 7-10 Oct. 2007

2006

Towards a Theory of Scale-Free Graphs: Definition, Properties, and Implications
L. Li, D. Alderson, J. C. Doyle and W. Willinger,
Internet Mathematics, 2(4): 431-523, Mar 2006 (1.8MB)

Cross-layer congestion control, routing and scheduling design in ad hoc wireless network,
L. Chen and S. H. Low and M. Chiang and J. C. Doyle,
in Proc. IEEE Infocom, pp1-13; Barcelona, Spain, Apr 2006. (431K)

Discovering Dependencies for Network Management,
Victor Bahl, Paul Barham, Richard Black, Ranveer Chandra, Moises Goldszmidt, Rebecca Isaacs, Srikanth Kandula, Lun Li, John MacCormick, David A. Maltz, Richard Mortier, Mike Wawrzoniak, and Ming Zhang,
In Proc. ACM/SIGCOMM HotNets, Irvine, CA, Sept 2006.

The Optimization-based Approach to Modeling Internet Topology
D. Alderson, W. Willinger, L. Li, and J. Doyle,
Telecommunications Planning: Innovations in Pricing, Network Design and Management. S. Raghavan and G. Anandlingham, eds. Springer. 2006.

2005

Understanding Internet Topology: Principles, Models, and Validation,
D. Alderson, L. Li, W. Willinger, J. C. Doyle,
IEEE/ACM Transaction on Networking, 13(6), Dec. 2005. (1.2MB)

The ‘‘robust yet fragile’’ nature of the Internet
John C. Doyle, David L. Alderson, Lun Li, Steven Low, Matthew Roughan, Stanislav Shalunov, Reiko Tanaka, and Walter Willinger
Proc. Natl. Acad. Sci. USA, 102(41):14497-14502, Oct 11 2005. (635K)

FAST TCP: From Theory to Experiments,
C. Jin, D. X. Wei, S. H. Low, G. Buhrmaster, J. Bunn, D. H. Choe, R. L. A. Cottrell, J. C. Doyle, W. Feng, O. Martin, H. Newman, F. Paganini, S. Ravot and S. Singh,
IEEE Network, 19(1):4-11, Jan/Feb 2005.(638k)

Cross-layer optimization in TCP/IP networks
J. Wang, L. Li, S. H. Low and J. C. Doyle.
IEEE/ACM Transactions on Networking, 13(3):582-568, Jun 2005 (409k)

Congestion control for high performance, stability and fairness in general networks
F. Paganini, Z. Wang, J. C. Doyle and S. H. Low.
IEEE/ACM Transactions on Networking, 13(1):43-56, Feb 2005 (444k)

The ‘‘robust yet fragile’’ nature of the Internet
John C. Doyle, David L. Alderson, Lun Li, Steven Low, Matthew Roughan, Stanislav Shalunov, Reiko Tanaka, and Walter Willinger
Proc. Natl. Acad. Sci. USA, 102(41):14497-14502, Oct 11 2005. (635K)

Joint congestion control and media access control design for wireless ad hoc networks
Lijun Chen, Steven H. Low and John C. Doyle.
in Proc. IEEE Infocom, Miami, FL, Mar 2005 (193k).

Optimization model of internet protocols
Steven H. Low, John Doyle, Lun Li, Ao Tang and Jiantao Wang
in Proceedings of SIGMETRICS, pp277 - 277, Banff, Alberta, Canada, June 6-10, 2005.

Robustness and the Internet: Design and evolution,
W. Willinger, J Doyle,
in Robust Design: A Repertoire of Biological, Ecological, and Engineering Case Studies
(Santa Fe Institute Studies on the Sciences of Complexity),
Erica Jen, Editor

2004

Methodological Frameworks for Large-scale Network Analysis and Design
Antonis Papachristodoulou, Lun Li and John C. Doyle,
CCR (Computer Communication Review), 34(3), Jul 2004 (828Kk)

Biological networks

2006

Advanced Methods and Algorithms for Biological Networks Analysis,
H El-Samad , A Papachristodoulou, S Prajna, J Doyle, and M Khammash
In Proc. IEEE, 94 (4): 832-853 APR 2006 (900K)

2005

Highly optimised global organisation of metabolic networks,
R. Tanaka, M. Csete and J. Doyle,
IEE Proc.-Syst. Biol. 152(4): 179, Dec 2005 (820K)

2003

• The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models,
  

Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC,
Bioinformatics 19 (4): 524-531, Mar 1 2003.

2002

• Robustness as a measure of plausibility in models of biochemical networks,
  

Morohashi M, Winn AE, Borisuk MT, Bolouri H, Doyle J, Kitano H,
Journal Of Theoretical Biology 216 (1): 19-30 May 7, 2002 .