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==Videos with overview of research== | |||
Aimed to be accessible to a general audience with an emphasis on neuroscience, biology, medicine, and tech, with new material on social architecture. Not much math. Mostly. Everything is in this dropbox folder: | |||
[https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 '''Dropbox folder'''] | |||
It's not very well organized but there are a variety of subfolders with videos, slides, and papers. Download the videos or they will run in preview mode and terminate early. | |||
The overarching theme is universal laws and architectures, with an emphasis on theoretical foundations, and applications to complex networks in tech, bio, neuro, med, eco, cyberphys, and societies. Central concepts are laws/layers/levels, virtualization, robust-efficiency and speed-accuracy tradeoffs (SATs), diversity-enabled sweet spots (DeSS), bowtie and hourglass, evolvability, horizontal transfer, virality, SLSDNQD (sparse, local, saturating, delayed, noisy, quantized, distributed) in sense\comms|compute/actuate control system components. | |||
As usual, analysis is more advanced than synthesis, though progress on synthesis has been dramatic in recent years particularly due to System Level Synthesis (SLS). | |||
==Brief Bio== | ==Brief Bio== | ||
John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech | John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990. | ||
'''Research''' is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems. Control with sparse, local, delayed, saturating, quantized, uncertain sensing, communications, computing, and actuation using System Level Synthesis. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML). | |||
'''Prizes, awards, records, championships''' include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (x3 1998, 1999,2021), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for the shortest abstract in IEEE history, and fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile. | |||
[https://www.dropbox.com/sh/osm40o5qm54dxkr/AAAQgbl0M78FbaZ-r5eAebmwa?dl=0 NSF Style Bio] | |||
[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=J._Doyle%27s_Bio_Athletics (Old) Athletics Bio] | |||
== | ==Very Old Application Papers== | ||
For | For fairly complete list of references see [https://scholar.google.com/citations?user=C6DtGmMAAAAJ&hl=en Google Scholar] | ||
'''Neuroscience and Machine Learning''' : [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/NECO_a_00936.pdf Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings] Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, ''Neural Computation'', 2017 | |||
'''Education''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education for Conference on Decision and Control, 2016 | '''Education and Neuroscience''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education] for Conference on Decision and Control, 2016 | ||
'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability] Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), P Natl Acad Sci USA 111 (33) | '''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability] Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), ''P Natl Acad Sci USA'' 111 (33) | ||
'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] J Crit Care. (2012) | '''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] ''J Crit Care.'' (2012) | ||
'''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior], | '''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior], | ||
JC Doyle, MC Csete, | JC Doyle, MC Csete, | ||
P Natl Acad Sci USA, vol. 108, Sup 3 15624-15630 | ''P Natl Acad Sci USA'', vol. 108, Sup 3 15624-15630 | ||
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency], | '''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency], | ||
FA Chandra, G Buzi, JC Doyle | FA Chandra, G Buzi, JC Doyle | ||
Science 333(6039):187-192, July 2011 | ''Science'' 333(6039):187-192, July 2011 | ||
'''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.], | '''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.], | ||
D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle. | D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle. | ||
Physics of Fluids v23:6:065108 (2011) | ''Physics of Fluids'' v23:6:065108 (2011) | ||
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology], | '''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology], | ||
G Buzi, U Topcu, J Doyle, | G Buzi, U Topcu, J Doyle, | ||
Automatica 47:1123-1130 (2011) | ''Automatica'' 47:1123-1130 (2011) | ||
'''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults] | '''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults] | ||
Page, Alderson, and Doyle | Page, Alderson, and Doyle | ||
JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 116, (2011) | ''JOURNAL OF GEOPHYSICAL RESEARCH'', VOL. 116, (2011) | ||
'''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements], | '''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements], | ||
H Sandberg, JC Delvenne, JC Doyle, | H Sandberg, JC Delvenne, JC Doyle, | ||
''IEEE Trans Auto Control'', v56:2, 293-308 (2011) | |||
'''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks], | '''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks], | ||
L Chen, SH Low, and JC Doyle, | L Chen, SH Low, and JC Doyle, | ||
Computer Networks 55:480–496 (2011) | ''Computer Networks'' 55:480–496 (2011) | ||
'''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle, | '''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle, I''EEE Transactions on Circuits and Systems'' I, vol. 58, no. 2, pp. 374-387, Feb. 2011. | ||
'''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures] | '''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures] | ||
Alderson and Doyle, IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS, VOL. 40, NO. 4, JULY 2010 | Alderson and Doyle, ''IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS'', VOL. 40, NO. 4, JULY 2010 | ||
'''Internet''': [http://www.cds.caltech.edu/~doyle/wiki/images/f/f8/AMSNoticesInternet.pdf Mathematics and the Internet: A Source of Enormous Confusion and Great Potential] Willinger, Alderson, and Doyle, ''Notices of the AMS'' Volume 56, Number 5 (2009) | |||
'''Fire''': [http://www.cds.caltech.edu/~doyle/wiki/images/4/4a/ScienceFire.pdf Fire in the Earth System], ''Science'' 324, 481 (2009) | |||
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/Cell.pdf Robustness of Cellular Functions], Stelling, Sauer, Szallasi, Doyle, and Doyle, ''Cell'', 2004 | |||
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/05/ScienceOnlinePDF.pdf Reverse Engineering of Biological Complexity], Csete and Doyle, ''Science'', (2002) | |||
== Contact == | == Contact == | ||
| Line 154: | Line 122: | ||
Phone: 626.395.4808 <br> | Phone: 626.395.4808 <br> | ||
'''Admin Assistant''': | '''Admin Assistant''': Monica Nolasco <br> | ||
Office: 107 Steele,<br> | Office: 107 Steele,<br> | ||
Email: | Email: mnolasco AT caltech dot edu<br> | ||
Phone: 626.395.4140 <br> | Phone: 626.395.4140 <br> | ||
|- | |- | ||
Latest revision as of 16:47, 25 May 2022
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John C. Doyle 道耀 |
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Videos with overview of research
Aimed to be accessible to a general audience with an emphasis on neuroscience, biology, medicine, and tech, with new material on social architecture. Not much math. Mostly. Everything is in this dropbox folder:
It's not very well organized but there are a variety of subfolders with videos, slides, and papers. Download the videos or they will run in preview mode and terminate early.
The overarching theme is universal laws and architectures, with an emphasis on theoretical foundations, and applications to complex networks in tech, bio, neuro, med, eco, cyberphys, and societies. Central concepts are laws/layers/levels, virtualization, robust-efficiency and speed-accuracy tradeoffs (SATs), diversity-enabled sweet spots (DeSS), bowtie and hourglass, evolvability, horizontal transfer, virality, SLSDNQD (sparse, local, saturating, delayed, noisy, quantized, distributed) in sense\comms|compute/actuate control system components.
As usual, analysis is more advanced than synthesis, though progress on synthesis has been dramatic in recent years particularly due to System Level Synthesis (SLS).
Brief Bio
John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.
Research is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems. Control with sparse, local, delayed, saturating, quantized, uncertain sensing, communications, computing, and actuation using System Level Synthesis. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).
Prizes, awards, records, championships include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (x3 1998, 1999,2021), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for the shortest abstract in IEEE history, and fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.
Very Old Application Papers
For fairly complete list of references see Google Scholar
Neuroscience and Machine Learning : Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, Neural Computation, 2017
Education and Neuroscience: Tutorial on education for Conference on Decision and Control, 2016
Medicine: Robust efficiency and actuator saturation explain healthy heart rate control and variability Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), P Natl Acad Sci USA 111 (33)
Medicine: Sepsis: Something Old, Something New, and a Systems View J Crit Care. (2012)
Universal architectures: Architecture, constraints, and behavior, JC Doyle, MC Csete, P Natl Acad Sci USA, vol. 108, Sup 3 15624-15630
Biology: Gycolytic oscillations and limits on robust efficiency, FA Chandra, G Buzi, JC Doyle Science 333(6039):187-192, July 2011
Turbulence: Amplification and nonlinear mechanisms in plane Couette flow., D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle. Physics of Fluids v23:6:065108 (2011)
Biology: Analysis of autocatalytic networks in biology, G Buzi, U Topcu, J Doyle, Automatica 47:1123-1130 (2011)
Earthquakes: The magnitude distribution of earthquakes near Southern California faults Page, Alderson, and Doyle JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 116, (2011)
Physics: On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements, H Sandberg, JC Delvenne, JC Doyle, IEEE Trans Auto Control, v56:2, 293-308 (2011)
Wireless: Cross-layer design in multihop wireless networks, L Chen, SH Low, and JC Doyle, Computer Networks 55:480–496 (2011)
Circuits: Solving Large-Scale Hybrid Circuit-Antenna Problems Lavaei, Babakhani, Hajimiri and Doyle, IEEE Transactions on Circuits and Systems I, vol. 58, no. 2, pp. 374-387, Feb. 2011.
Complexity: Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures Alderson and Doyle, IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS, VOL. 40, NO. 4, JULY 2010
Internet: Mathematics and the Internet: A Source of Enormous Confusion and Great Potential Willinger, Alderson, and Doyle, Notices of the AMS Volume 56, Number 5 (2009)
Fire: Fire in the Earth System, Science 324, 481 (2009)
Biology: Robustness of Cellular Functions, Stelling, Sauer, Szallasi, Doyle, and Doyle, Cell, 2004
Biology: Reverse Engineering of Biological Complexity, Csete and Doyle, Science, (2002)
Contact
|
Mailing Address John Doyle |
Contact information E-mail: doyle AT caltech dot edu Admin Assistant: Monica Nolasco |
Other Caltech links |