Naming, Addressing and Control in Cell Biology: Difference between revisions
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== Topics == | == Topics == | ||
* Modeling dynamics with stoichiometry matrices | |||
* Modules in biosynthesis: carriers, precursors and pathways | |||
* Control: Fastest: allosteric, Fast: translation, Slow: transcription, example lac operon | |||
* Naming and addressing via molecular recognition, example: lambda phage repressor | |||
== Slides == | == Slides == | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb02SlidesReading/AAbiosynFeb02.pptx | *[http://www.cds.caltech.edu/~doyle/213/Feb02SlidesReading/AAbiosynFeb02.pptx Modular structures in cell biology] | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb02SlidesReading/CtrlProteinLevelFeb02.pptx.pptx Control in proteins] | *[http://www.cds.caltech.edu/~doyle/213/Feb02SlidesReading/CtrlProteinLevelFeb02.pptx.pptx Control in proteins] | ||
== Reading == | ==Reading== | ||
*[http://www.amazon.com/Genetic-Switch-Third-Revisited-Ptashne/dp/0879697164 <i>A Genetic Switch, Third Edition: Phage Lambda Revisited </i>, Ptashne] | |||
*[http://www.amazon.com/Introduction-Systems-Biology-Mathematical-Computational/dp/1584886420/ref=sr_1_1?ie=UTF8&s=books&qid=1265182827&sr=1-1 <i>An Introduction to Systems Biology: Design Principles of Biological Circuits</i>, Alon, Uri] | |||
*[http://www.cds.caltech.edu/~doyle/213/Feb02SlidesReading/Final_IEE_SB.pdf <i>Highly optimised global organisation of metabolic networks</i>, R. Tanaka, M. Csete and J. Doyle] | |||
*[http://www.cds.caltech.edu/~doyle/213/Feb02SlidesReading/ScaleRichMetabolism.pdf <i>Quantitative evaluation of scale-rich metabolic networks, Tanaka, Doyle] | |||
Latest revision as of 07:53, 3 February 2010
Topics
- Modeling dynamics with stoichiometry matrices
- Modules in biosynthesis: carriers, precursors and pathways
- Control: Fastest: allosteric, Fast: translation, Slow: transcription, example lac operon
- Naming and addressing via molecular recognition, example: lambda phage repressor
Slides
Reading
- A Genetic Switch, Third Edition: Phage Lambda Revisited , Ptashne
- An Introduction to Systems Biology: Design Principles of Biological Circuits, Alon, Uri
- Highly optimised global organisation of metabolic networks, R. Tanaka, M. Csete and J. Doyle
- Quantitative evaluation of scale-rich metabolic networks, Tanaka, Doyle