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"Professor Doyle's current research interests are in theoretical foundations for complex networks, primarily in network engineering and biology." He is also "interested in multiscale physics and financial markets, and the interplay between robustness, feedback, control, dynamical systems, computation, communications, and statistical physics." (quote from CDS website)
This is very out of date. Sorry.  Will try to fix it. Stay tuned.


==Main Research Topics==
"Professor Doyle's current '''research''' interests are in theoretical foundations for complex networks, primarily in network engineering and biology." He is also "interested in multiscale physics and financial markets, and the interplay between robustness, feedback, control, dynamical systems, computation, communications, and statistical physics." <http://www.cds.caltech.edu/people/> Aug 2008
*[[systems biology]]
**[[Robust yet fragile & biological networks]]


Prof. Doyle has "applied complex ideas of robust design and control to many fields and is working on a unified theory of control in engineering, physics and biology." <http://www.ieee.org/portal/pages/about/awards/bios/2004controlsystems.html> Aug 2008


*[[complex networks]]
==Current Projects==
**[[Robust yet fragile & biological networks]]
*[http://cds-web1.cds.caltech.edu/~doyle2/wiki/index.php?title=Systems_biology Systems Biology] ([http://www.its.caltech.edu/~fiona Fiona Chandra], Genti Buzi)
**[[complexity and robustness]]
**Fundamental constraints and trade-offs of autocatalytic networks.
**[[Internet topology]]
**Collaborators: [http://biochemistry.ucsf.edu/labs/elsamad/home/index.html Hana El-Samad], [http://sysos.eng.ox.ac.uk/control/sysos/index.php/User:Antonis Antonis Papachristodoulou]
**[[network architecture and protocols]]
*Fluids: [http://cds-web1.cds.caltech.edu/~doyle2/wiki/index.php?title=Turbulence Turbulence Modeling] ([https://www.cds.caltech.edu/~dennice/ Dennice Gayme])
**Collaborators: [http://engineering.ucsb.edu/~bamieh/ Bassam Bamieh], [http://www.mckeon.caltech.edu/ Beverly McKeon]
*[http://openwetware.org/wiki/Doyle Physiology]:  Dynamic Modeling of Heart Rate Variability (Li Na, Jerry Cruz)
**Heart rate (HR) in healthy humans has high variability, and loss of this HR variability (HRV) is a signature of stress, fatigue, aging, or disease1-9.  Correlating health and high HRV using time series analyses is popular in clinical  and athletic training10 research, but its practical impact has been limited by lack of specific physiological mechanisms explaining HRV patterns.  Conjectures attributing the cryptic etiology of HRV to complex feedbacks and nonlinear dynamics have similarly lacked mechanistic explanation. We leverage concepts from physiology, evolution, and control theory to analyze data from exercising athletes and develop mechanistic models explaining correlations between health, stress, and HRV.
*[http://cds-web1.cds.caltech.edu/~doyle2/wiki/index.php?title=Networking Internet and Networking] ([http://www.cds.caltech.edu/~chenlj/ Lijun Chen], [http://www.cds.caltech.edu/~lavaei/ Javad Lavaei], [http://www.cds.caltech.edu/~sojoudi/ Somayeh Sojoudi])
**Collaborators: [http://netlab.caltech.edu/slow/ Steven Low]
*Economics (Jerry Cruz)
** Market Bubbles and Crashes: We use tools from mathematical finance and stochastic control theory to investigate asset price bubbles and crashes in financial markets. We wish to gain insight using models that account for financial intermediation and associated frictions. Moreover, recent local-martingale characterizations of bubbles may provide avenues into developing new methods of empirical testing for bubbles.
*Distributed Control ([http://www.cds.caltech.edu/~lavaei/ Javad Lavaei], [http://www.cds.caltech.edu/~motee Nader Motee], Li Na)
**Designing Games for Distributed Opitmization (Li Na) <br>The central goal in multiagent systems is to design local control laws for the individual agents to ensure that the emergent global behavior is desirable with respect to a given system level objective.  Ideally, a system designer seeks to satisfy this goal while conditioning each agent's control law on the least amount of information possible.  Unfortunately, there are no existing methodologies for addressing this design challenge. The goal of this research is to address this challenge using the field of game theory. We develop a systematic methodology for distributed optimization using the framework of state based potential games.


*[[exercise physiology]]
==Research Grants==
*[http://www.nsf.gov/index.jsp NSF] award: [http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0326635 ITR COLLAB: Theory and Software Infrastructure for a Scalable Systems Biology], 2003-present


See also [[Papers]] by topic.
*Some joint projects with [http://www.cds.caltech.edu/~murray/wiki/Main_Page#Research Prof. Richard Murray] (with links to his wiki below)
**[http://www.cds.caltech.edu/~murray/VaVmuri/index.php?title=Main_Page Specification, Design and Verification of Distributed Embedded Systems] (MURI/AFOSR)
**Networked Feedback Systems in Biology (ARO ICB)
**[http://www.cds.caltech.edu/~murray/wiki/Model-Based_Design_and_Qualification_of_Complex_Systems Model-Based Design and Qualification of Complex Systems] (Boeing)


==More research links==
*Some joint grants with [http://netlab.caltech.edu/~slow/ Prof. Steven Low]:
*[http://www.cds.caltech.edu/research/ CDS research]
**MURI          Analysis and modeling of networks with long range dependence (LRD) characteristics (PI - Jean Walrand, UC Berkeley; Co-PIs - John Doyle, Steven Low, R. Srikanth (UIUC), V. Anantharam & A. Zakhor (UC Berkeley), D. Towsley & W. Gong (U. Mass. Amherst)2008
*[http://leecenter.caltech.edu/theory.html Lee Center, Caltech]
**NSF RI WAN in Lab (Newman, Psaltis, Yip) 2003-08
**NSF NeTS Collaborative Research: Optimization and Games in Interdomain Routing 2006
**NSF STI Multi-Gbps TCP: Data Intensive Networks for Science & Engineering (Bunn, Newman) 2002-05
**NSF ITR Optimal and Robust TCP Congestion Control 2001-04
**ARO DURIP Hybrid WAN in Lab (Newman, Psaltis, Yip) 2004-05
**ARO Network Research Analytical Theory of Protocols 2002-05
**ARO Network Science Networked control systems (Murray, Parrilo (MIT)) 2005-2006
(Note that other Co-PI are noted in brackets on these joint grants with Prof. Low and Prof. Doyle)


'''HOT'''
== Past Projects ==
Caltech
*[http://www.cds.caltech.edu/~doyle/hot/ HOT : Highly Optimized/Organized Tradeoffs/Tolerance, A unified theory of complex networks ]
*[http://www.cds.caltech.edu/sostools/ SOSTOOLS : Software for analysis of complex systems]
*[http://www.cds.caltech.edu/~doyle/MURI.html "Mathematical Infrastructure for Robust Virtual Engineering"] MURI award 1996
*Past projects with Prof Murray (links to his wiki)
**[http://www.cds.caltech.edu/~murray/projects/afosr95-vehicles/ Robust Nonlinear Control Theory with Application to Aerospace Vehicles] (AFOSR)
**[http://www.cds.caltech.edu/~murray/cdspanel/ Panel on Future Directions in Control, Dynamics, and Systems]
**[http://www.cds.caltech.edu/~murray/projects/nsf93-crcd/index.html Curriculum in Control and Dynamical Systems] (NSF)


Organized complexity in biology and internet technology
Other
 
*[http://www.hot.caltech.edu/ HOT: Highly Optimized/Organized Tradeoffs/Tolerance ]
*[http://www.physics.ucsb.edu/~complex/ Jean Carlson’s HOT website]
*[http://leecenter.caltech.edu/doyle-res.html HOT at Lee Center, Caltech]
 
'''FAST'''
 
New internet protocol design.
 
*[http://netlab.caltech.edu/ Fast AQM Scalable TCP]
*[http://www.fastsoft.com/ FAST TCP application]
*[http://netlab.caltech.edu/FAST/ FAST TCP background]
 
'''CIMMS'''
 
Modelling and analysis of complex phenomena across multiple time and length scales.


==Collaborative groups==
*[http://www.cimms.caltech.edu/whatiscimms.html CIMMS: Center for Integrative Multiscale Modeling and Simulation]
*[http://www.cimms.caltech.edu/whatiscimms.html CIMMS: Center for Integrative Multiscale Modeling and Simulation]
*[http://www.cds.caltech.edu/~murray/wiki/Main_Page Prof. Richard Murray]
* [http://biochemistry.ucsf.edu/labs/elsamad/home/index.html Prof. Hana El-Samad (UCSF)]
* [http://leecenter.caltech.edu/theory.html Lee Center for Networking]
*[http://netlab.caltech.edu/ Netlab]
**[http://netlab.caltech.edu/FAST/FAST: Fast AQM Scalable TCP, new internet protocol design.]


'''SBML'''
*[http://www.sisl.caltech.edu/ SISL]


* and more...


'''SOSTOOLS'''
==See also==
*[[Papers]]
*[[Special:Allpages|All articles]]
*[[Special:Categories|Pages listed by Categories]]


(Older project)
===More research links===
*[http://www.cds.caltech.edu/sostools/ SOSTOOLS: Software for analysis of complex systems]
Caltech
*[http://www.cds.caltech.edu/~murray/wiki/Main_Page#Research Prof. Murray's projects]
*[http://netlab.caltech.edu/projects.php Prof. Low's projects]
*[http://www.cds.caltech.edu/research/ CDS]
*[http://leecenter.caltech.edu/doyle-res.html HOT at Lee Center]
*[http://www.sisl.caltech.edu/people/index.html SISL]


UCSB
*[http://www.physics.ucsb.edu/~complex/ Jean Carlson’s HOT website]
[[Category:Research]]
[[Category:Research]]

Latest revision as of 15:20, 13 March 2017

This is very out of date. Sorry. Will try to fix it. Stay tuned.

"Professor Doyle's current research interests are in theoretical foundations for complex networks, primarily in network engineering and biology." He is also "interested in multiscale physics and financial markets, and the interplay between robustness, feedback, control, dynamical systems, computation, communications, and statistical physics." <http://www.cds.caltech.edu/people/> Aug 2008

Prof. Doyle has "applied complex ideas of robust design and control to many fields and is working on a unified theory of control in engineering, physics and biology." <http://www.ieee.org/portal/pages/about/awards/bios/2004controlsystems.html> Aug 2008

Current Projects

  • Systems Biology (Fiona Chandra, Genti Buzi)
  • Fluids: Turbulence Modeling (Dennice Gayme)
  • Physiology: Dynamic Modeling of Heart Rate Variability (Li Na, Jerry Cruz)
    • Heart rate (HR) in healthy humans has high variability, and loss of this HR variability (HRV) is a signature of stress, fatigue, aging, or disease1-9. Correlating health and high HRV using time series analyses is popular in clinical and athletic training10 research, but its practical impact has been limited by lack of specific physiological mechanisms explaining HRV patterns. Conjectures attributing the cryptic etiology of HRV to complex feedbacks and nonlinear dynamics have similarly lacked mechanistic explanation. We leverage concepts from physiology, evolution, and control theory to analyze data from exercising athletes and develop mechanistic models explaining correlations between health, stress, and HRV.
  • Internet and Networking (Lijun Chen, Javad Lavaei, Somayeh Sojoudi)
  • Economics (Jerry Cruz)
    • Market Bubbles and Crashes: We use tools from mathematical finance and stochastic control theory to investigate asset price bubbles and crashes in financial markets. We wish to gain insight using models that account for financial intermediation and associated frictions. Moreover, recent local-martingale characterizations of bubbles may provide avenues into developing new methods of empirical testing for bubbles.
  • Distributed Control (Javad Lavaei, Nader Motee, Li Na)
    • Designing Games for Distributed Opitmization (Li Na)
      The central goal in multiagent systems is to design local control laws for the individual agents to ensure that the emergent global behavior is desirable with respect to a given system level objective. Ideally, a system designer seeks to satisfy this goal while conditioning each agent's control law on the least amount of information possible. Unfortunately, there are no existing methodologies for addressing this design challenge. The goal of this research is to address this challenge using the field of game theory. We develop a systematic methodology for distributed optimization using the framework of state based potential games.

Research Grants

  • Some joint grants with Prof. Steven Low:
    • MURI Analysis and modeling of networks with long range dependence (LRD) characteristics (PI - Jean Walrand, UC Berkeley; Co-PIs - John Doyle, Steven Low, R. Srikanth (UIUC), V. Anantharam & A. Zakhor (UC Berkeley), D. Towsley & W. Gong (U. Mass. Amherst)2008
    • NSF RI WAN in Lab (Newman, Psaltis, Yip) 2003-08
    • NSF NeTS Collaborative Research: Optimization and Games in Interdomain Routing 2006
    • NSF STI Multi-Gbps TCP: Data Intensive Networks for Science & Engineering (Bunn, Newman) 2002-05
    • NSF ITR Optimal and Robust TCP Congestion Control 2001-04
    • ARO DURIP Hybrid WAN in Lab (Newman, Psaltis, Yip) 2004-05
    • ARO Network Research Analytical Theory of Protocols 2002-05
    • ARO Network Science Networked control systems (Murray, Parrilo (MIT)) 2005-2006

(Note that other Co-PI are noted in brackets on these joint grants with Prof. Low and Prof. Doyle)

Past Projects

Caltech

Other

Collaborative groups

  • and more...

See also

More research links

Caltech

UCSB