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<font face="Helvetica" size=5><b>John C. Doyle 道耀 </b><br><br></font>
<b>John C. Doyle</b><br><br>
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Jean-Lou Chameau Professor<br>
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John G Braun Professor<br>
of Control and Dynamical Systems<br>
of Control and Dynamical Systems<br>
Electrical Engineering<br>
Electrical Engineering<br>
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California Institute of Technology<br>
California Institute of Technology<br>
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[[#Contact|Contact]]
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==Videos with overview of research==
Aimed to be accessible to a general audience with an emphasis on neuroscience, biology, medicine, and tech, with new material on social architecture. Not much math. Mostly.  Everything is in this dropbox folder:
[https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 '''Dropbox folder''']
It's not very well organized but there are a variety of subfolders with videos, slides, and papers.  Download the videos or they will run in preview mode and terminate early.
The overarching theme is universal laws and architectures, with an emphasis on theoretical foundations, and applications to complex networks in tech, bio, neuro, med, eco, cyberphys, and societies.  Central concepts are laws/layers/levels, virtualization, robust-efficiency and speed-accuracy tradeoffs (SATs), diversity-enabled sweet spots (DeSS), bowtie and hourglass, evolvability, horizontal transfer, virality, SLSDNQD (sparse, local, saturating, delayed, noisy, quantized, distributed) in sense\comms|compute/actuate control system components.


As usual, analysis is more advanced than synthesis, though progress on synthesis has been dramatic in recent years particularly due to System Level Synthesis (SLS).


<td align=center width=20%>
==Brief Bio==
<font face="Comic Sans MS">
[[J. Doyle’s Bio]]:


News & Events:
John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.
[[Connections Workshop]]


[https://www.cds.caltech.edu/squirrelmail/src/login.php CDS Webmail]
'''Research''' is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems. Control with sparse, local, delayed, saturating, quantized, uncertain sensing, communications, computing, and actuation using System Level Synthesis. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).  


Other Activities:<br/>
'''Prizes, awards, records, championships''' include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (x3 1998, 1999,2021), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for the shortest abstract in IEEE history, and fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.
*[[Group Schedule]]
*[[CDS 212]]
*[[CDS 213]]</font></td>


{|
[https://www.dropbox.com/sh/osm40o5qm54dxkr/AAAQgbl0M78FbaZ-r5eAebmwa?dl=0 NSF Style Bio]
|-
|}


<font face="Comic Sans MS"><br><hr>
[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=J._Doyle%27s_Bio_Athletics (Old) Athletics Bio]
<table width=100%> __NOTOC__
<tr>
<td width=20% align=center> [[#Publications|Papers]]</td>
<td width=20% align=center> [[#Projects|Research]]</td>
<td width=20% align=center> [[#Group|Group]]</td>
<td width=20% align=center> [[#Teaching|Teaching]]</td>
<td width=20% align=center> [[#Contact|Contact]]</td>


{|
==Very Old Application Papers==
|-
|}
<hr>


==Papers==
For fairly complete list of references see [https://scholar.google.com/citations?user=C6DtGmMAAAAJ&hl=en Google Scholar]
*favourite papers
*


== Research ==
'''Neuroscience and Machine Learning''' : [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/NECO_a_00936.pdf Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings] Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, ''Neural Computation'', 2017
[[Research| Our research]] interests are in theoretical foundations for complex networks in engineering and biology, as well as multiscale physics, and include integrating modeling, ID, analysis and design of uncertain nonlinear systems, and computation in analysis and simulation, including complexity theory to guide algorithm development.


Applications interests are motivated by the interplay between: control, dynamical systems, and design and analysis of large, complex systems.
'''Education and Neuroscience''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education] for Conference on Decision and Control, 2016 


==Group==
'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability]‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), ''P Natl Acad Sci USA'' 111 (33)
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''Faculty'''
|'''Postdocs
|'''Students'''
|-
|John Doyle
|[http://www.cds.caltech.edu/people/portal/?id=662 Aaron D. Ames]  


[http://www.cds.caltech.edu/~chen/ Lijun Chen]  
'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] ''J Crit Care.'' (2012)


[http://www.cds.caltech.edu/~alfredo/ Alfredo Martinez]
'''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior],
JC Doyle, MC Csete,
''P Natl Acad Sci USA'', vol. 108, Sup 3 15624-15630


[http://www.cds.caltech.edu/~dtarraf/ Danielle C.Tarraf]
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency],
FA Chandra, G Buzi, JC Doyle
''Science'' 333(6039):187-192, July 2011


|''Graduate students''
'''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.],
[http://www.cds.caltech.edu/people/portal/?id=4 Aristotelis Asimakopoulos]
D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle.
''Physics of Fluids'' v23:6:065108 (2011)


[http://www.cds.caltech.edu/people/portal/?id=384 Gentian Buzi]
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology],
G Buzi, U Topcu, J Doyle,
''Automatica'' 47:1123-1130 (2011)


[http://www.cds.caltech.edu/~andyl/ Andrew Lamperski]
'''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults]
Page, Alderson, and Doyle
''JOURNAL OF GEOPHYSICAL RESEARCH'', VOL. 116, (2011)


[http://www.cds.caltech.edu/people/portal/?id=331 Dennice Maynard Gayme]  
'''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements],
H Sandberg, JC Delvenne, JC Doyle,
''IEEE Trans Auto Control'', v56:2, 293-308 (2011)


''Undergraduate students''  
'''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks],
L Chen, SH Low, and JC Doyle,
''Computer Networks'' 55:480–496 (2011)


[http://www.cds.caltech.edu/people/portal/?id=722Chinwendu Enyioha]
'''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle,  I''EEE Transactions on Circuits and Systems'' I, vol. 58, no. 2, pp. 374-387, Feb. 2011.
|-
|'''Admin staff'''
|'''Visitors'''
|'''Alumni'''
|-
|Gloria Bain
|[http://www.cds.caltech.edu/people/portal/?id=713 Rutika Muchhala (student)]


[http://www.cds.caltech.edu/people/portal/?id=186 Lun Li]
'''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures]
|[http://www.cds.caltech.edu/people/portal/?id=40 Yindi Jing]
Alderson and Doyle, ''IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS'', VOL. 40, NO. 4, JULY 2010


[http://www.cds.caltech.edu/people/portal/?id=186 Lun Li]
'''Internet''': [http://www.cds.caltech.edu/~doyle/wiki/images/f/f8/AMSNoticesInternet.pdf Mathematics and the Internet: A Source of Enormous Confusion and Great Potential] Willinger, Alderson, and Doyle, ''Notices of the AMS'' Volume 56, Number 5 (2009)


[http://www.cds.caltech.edu/people/portal/?id=184 Oluwatosin Otitoju]
'''Fire''': [http://www.cds.caltech.edu/~doyle/wiki/images/4/4a/ScienceFire.pdf Fire in the Earth System], ''Science'' 324, 481 (2009)
|-
|&nbsp;
|'''Past Postdocs'''
|'''Past Visitors'''
|-
|
|?
|?
|}


==Teaching==
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/Cell.pdf Robustness of Cellular Functions], Stelling, Sauer, Szallasi, Doyle, and Doyle, ''Cell'', 2004


[http://www.cds.caltech.edu/academics/courses/ CDS courses]
'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/05/ScienceOnlinePDF.pdf Reverse Engineering of Biological Complexity], Csete and Doyle, ''Science'', (2002)


== Contact ==
== Contact ==
Line 121: Line 110:


John Doyle <br>
John Doyle <br>
California Institute of Technology<br>
Control and Dynamical Systems, MC 107-81<br>
Control and Dynamical Systems, MC 107-81<br>
California Institute of Technology<br>
1200 E. California Blvd<br>
1200 E. California Blvd<br>
Pasadena, CA 91125 USA
Pasadena, CA 91125 USA
Line 129: Line 118:
'''Contact information'''
'''Contact information'''


E-mail: doyle@cds.caltech.edu <br>
E-mail: doyle AT caltech dot edu <br>  
Office: 109 Steele, (626) 395-4808<br>
Office: 210 Annenberg,<br>
Asst: Gloria Bain, x4140 <br>
Phone: 626.395.4808 <br>
Labs: 12 STL, 110 GUG (x2319)
 
'''Admin Assistant''': Monica Nolasco  <br>
Office: 107 Steele,<br>
Email:  mnolasco AT caltech dot edu<br>
Phone: 626.395.4140 <br>
|-
|-
|
|


'''Other links'''
===Other Caltech links===


*[http://www.caltech.edu California Institute of Technology]
*[http://www.caltech.edu California Institute of Technology]
*[http://www.eas.caltech.edu Engineering and Applied Science Division]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
*[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}
|}

Latest revision as of 16:47, 25 May 2022

Smallpic.JPG

John C. Doyle 道耀

Jean-Lou Chameau Professor
of Control and Dynamical Systems
Electrical Engineering
and BioEngineering

Division of Engineering and Applied Science
California Institute of Technology


Contact

Blossoms900strip.jpg Blossoms900strip.jpg Blossoms900strip.jpg Blossoms900strip.jpg Blossoms900strip.jpg

Videos with overview of research

Aimed to be accessible to a general audience with an emphasis on neuroscience, biology, medicine, and tech, with new material on social architecture. Not much math. Mostly. Everything is in this dropbox folder:

Dropbox folder

It's not very well organized but there are a variety of subfolders with videos, slides, and papers. Download the videos or they will run in preview mode and terminate early.

The overarching theme is universal laws and architectures, with an emphasis on theoretical foundations, and applications to complex networks in tech, bio, neuro, med, eco, cyberphys, and societies. Central concepts are laws/layers/levels, virtualization, robust-efficiency and speed-accuracy tradeoffs (SATs), diversity-enabled sweet spots (DeSS), bowtie and hourglass, evolvability, horizontal transfer, virality, SLSDNQD (sparse, local, saturating, delayed, noisy, quantized, distributed) in sense\comms|compute/actuate control system components.

As usual, analysis is more advanced than synthesis, though progress on synthesis has been dramatic in recent years particularly due to System Level Synthesis (SLS).

Brief Bio

John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.

Research is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems. Control with sparse, local, delayed, saturating, quantized, uncertain sensing, communications, computing, and actuation using System Level Synthesis. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).

Prizes, awards, records, championships include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (x3 1998, 1999,2021), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for the shortest abstract in IEEE history, and fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.

NSF Style Bio

(Old) Athletics Bio

Very Old Application Papers

For fairly complete list of references see Google Scholar

Neuroscience and Machine Learning : Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, Neural Computation, 2017

Education and Neuroscience: Tutorial on education for Conference on Decision and Control, 2016

Medicine: Robust efficiency and actuator saturation explain healthy heart rate control and variability‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), P Natl Acad Sci USA 111 (33)

Medicine: Sepsis: Something Old, Something New, and a Systems View J Crit Care. (2012)

Universal architectures: Architecture, constraints, and behavior, JC Doyle, MC Csete, P Natl Acad Sci USA, vol. 108, Sup 3 15624-15630

Biology: Gycolytic oscillations and limits on robust efficiency, FA Chandra, G Buzi, JC Doyle Science 333(6039):187-192, July 2011

Turbulence: Amplification and nonlinear mechanisms in plane Couette flow., D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle. Physics of Fluids v23:6:065108 (2011)

Biology: Analysis of autocatalytic networks in biology, G Buzi, U Topcu, J Doyle, Automatica 47:1123-1130 (2011)

Earthquakes: The magnitude distribution of earthquakes near Southern California faults Page, Alderson, and Doyle JOURNAL OF GEOPHYSICAL RESEARCH, VOL. 116, (2011)

Physics: On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements, H Sandberg, JC Delvenne, JC Doyle, IEEE Trans Auto Control, v56:2, 293-308 (2011)

Wireless: Cross-layer design in multihop wireless networks, L Chen, SH Low, and JC Doyle, Computer Networks 55:480–496 (2011)

Circuits: Solving Large-Scale Hybrid Circuit-Antenna Problems Lavaei, Babakhani, Hajimiri and Doyle, IEEE Transactions on Circuits and Systems I, vol. 58, no. 2, pp. 374-387, Feb. 2011.

Complexity: Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures Alderson and Doyle, IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS, VOL. 40, NO. 4, JULY 2010

Internet: Mathematics and the Internet: A Source of Enormous Confusion and Great Potential Willinger, Alderson, and Doyle, Notices of the AMS Volume 56, Number 5 (2009)

Fire: Fire in the Earth System, Science 324, 481 (2009)

Biology: Robustness of Cellular Functions, Stelling, Sauer, Szallasi, Doyle, and Doyle, Cell, 2004

Biology: Reverse Engineering of Biological Complexity, Csete and Doyle, Science, (2002)

Contact

Mailing Address

John Doyle
California Institute of Technology
Control and Dynamical Systems, MC 107-81
1200 E. California Blvd
Pasadena, CA 91125 USA

Contact information

E-mail: doyle AT caltech dot edu
Office: 210 Annenberg,
Phone: 626.395.4808

Admin Assistant: Monica Nolasco
Office: 107 Steele,
Email: mnolasco AT caltech dot edu
Phone: 626.395.4140

Other Caltech links