Modeling Biological Systems: Difference between revisions
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== Reading == | == Reading == | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Faeder_2009.pdf <i>Rule-Based Modeling of Biochemical Systems with BioNetGen< | *[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Faeder_2009.pdf <i>Rule-Based Modeling of Biochemical Systems with BioNetGen</i>, Faeder, Blinov and Hlavacek] | ||
* [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Bioinformatics09a_inpress.pdf Simulation of large-scale rule-based models, Colvin et al.] | * [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Bioinformatics09a_inpress.pdf Simulation of large-scale rule-based models, Colvin et al.] | ||
* [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/FaederPerspectives.pdf The Complexity of Cell Signaling and the Need for a New Mechanics, Hlavacek and Faeder] | * [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/FaederPerspectives.pdf The Complexity of Cell Signaling and the Need for a New Mechanics, Hlavacek and Faeder] | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/STKE2006.pdf Rules for Modeling Signal-Transduction Systems, Hlavacek et al.] | *[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/STKE2006.pdf Rules for Modeling Signal-Transduction Systems, Hlavacek et al.] | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/nri-published.pdf Mathematical and Computational Models of Immune-Receptor Signalling, Goldstein et al.] | *[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/nri-published.pdf Mathematical and Computational Models of Immune-Receptor Signalling, Goldstein et al.] | ||
Revision as of 19:25, 17 February 2010
Topics
Slides
Reading
- Rule-Based Modeling of Biochemical Systems with BioNetGen, Faeder, Blinov and Hlavacek
- Simulation of large-scale rule-based models, Colvin et al.
- The Complexity of Cell Signaling and the Need for a New Mechanics, Hlavacek and Faeder
- Rules for Modeling Signal-Transduction Systems, Hlavacek et al.
- Mathematical and Computational Models of Immune-Receptor Signalling, Goldstein et al.