Complexity and robustness: Difference between revisions

Latest revision as of 23:05, 12 September 2008

Complexity and Robustness can be observed in communication networks and in biological systems. Some introductory notes, slides and references are listed below.

Slides

1. Overview of robustness (SFI robustness workshop) (ppt)

2. Design degree of freedom (ppt)

3. NAS symposium on self-organizing systems (ppt)

4. SFI networking workshop (ppt)

5. IMA talks by J. C. Doyle (ppt) and by S. H. Low (ppt)

6. ITP biology talk (ppt)

7. Robustness of Signal Transduction Networks slides from UCSB
Apr 12, 2001

Note: there is a large overlap in material in the above slides

Older slides

CDC plenary slides (ppt)

Introduction to complex networks (ppt)

Allerton plenary (ppt)

Introduction to HOT (ppt)

Slides from an Old physics seminar slides (ppt)

Papers

Power Laws, Highly Optimized Tolerance and Generalized Source Coding,
J. Doyle and J.M. Carlson,
Phys. Rev. Let., 84(24):5656-5659, 2000.

Scalable Laws for Stable Network Congestion Control
Fernando Paganini, J. C. Doyle and S. H. Low.
in Proceedings of IEEE CDC, Orlando, FL, Dec 2001 (475k).

Heavy Tails, Generalized Coding, and Optimal Web Layout
Zhu X, Yu J, Doyle J,
in Proc. IEEE Infocom joint with CCS, Vol. 3: pp1617 - 1626, Apr 2001

Robust perfect adaptation in bacterial chemotaxis through integral feedback control.
Yi T-M, Huang Y, Simon MI, Doyle J.
Proc. Natl. Acad. Sci. USA 97(9):4649-4653, 2000.

Highly optimized tolerance: A mechanism for power laws in designed systems
JM Carlson, J Doyle
Phys Rev E 60(2) 2, 1999

Feedback regulation of the heat shock response in E. coli

Kurata, H. El-Samad, H. Yi, T.-M. Khammash, M. Doyle, J.
IEEE CDC Vol 1 pp 837-842; Orlando, FL, USA 2001

Drafts

Theoretical Foundations for Ubiquitous, Networked Control, Communications, and Computing,
working paper, (PS)

Multiscale networking, robustness, and rigor,
informal essay, (html)

Notes on feedback (ppt)

Note

This page was copied from 2005 <http://www.cds.caltech.edu/~doyle/SFI_robustness/> and re-formatted with updated citation details. Note there are both internal wiki links, external links to <http://www.cds.caltech.edu/~doyle/SFI_robustness/> and elsewhere. Content from <http://www.cds.caltech.edu/~doyle/Networks/>, was merged onto this page due to large overlap in content.

To Do

@@ Line 1: / Line 1: @@
-There is '''Complexity and Robustness''' in communication networks. Some introductory notes, slides and references are listed below.
+'''Complexity and Robustness''' can be observed in communication networks and in biological systems. Some introductory notes, slides and references are listed below.
-This page was copied and reformatted from 2005 <http://www.cds.caltech.edu/~doyle/SFI_robustness/> and still needs to transfer links/files over to this wiki.
+==Slides==
-==Slides==
+.      Overview of robustness (SFI robustness workshop) [http://www.cds.caltech.edu/~doyle/SFI_robustness/robustness.ppt (ppt)]
+.      Design degree of freedom [http://www.cds.caltech.edu/~doyle/SFI_robustness/SFI_net1.ppt (ppt)]
+.      NAS symposium on self-organizing systems [http://www.cds.caltech.edu/~doyle/SFI_robustness/NAS.ppt (ppt)]
-.      Overview of robustness (SFI robustness workshop) (ppt)
+.      SFI networking workshop [http://www.cds.caltech.edu/~doyle/SFI_robustness/SFI_net2.ppt (ppt)]
-.      Design degree of freedom (ppt)
+.     IMA talks by J. C. Doyle [http://www.cds.caltech.edu/~doyle/Networks/IMA1.ppt (ppt)] and by S. H. Low [http://www.cds.caltech.edu/~doyle/Networks/TCPaqm.ppt (ppt)]
-.      NAS symposium on self-organizing systems (ppt)
+.      ITP biology talk [http://www.cds.caltech.edu/~doyle/Networks/ITP_bio.ppt (ppt)]
-.      SFI networking workshop (ppt)
+. Robustness of Signal Transduction Networks [http://online.itp.ucsb.edu/online/infobio01/doyle/ slides from UCSB]<br> Apr 12, 2001
 Note: there is a large overlap in material in the above slides
+===Older slides===
+*CDC plenary slides [http://www.cds.caltech.edu/~doyle/CmplxNets/CDC_plenary.ppt (ppt)]
+*Introduction to complex networks [http://www.cds.caltech.edu/~doyle/CmplxNets/intro_cmplx_net.ppt (ppt)]
+*Allerton plenary [http://www.cds.caltech.edu/~doyle/CmplxNets/allerton.ppt (ppt)]
+*Introduction to HOT [http://www.cds.caltech.edu/~doyle/CmplxNets/HOT_intro.ppt (ppt)]
+*Slides from an Old physics seminar slides [http://www.cds.caltech.edu/~doyle/SFI_robustness/UCSD_1.ppt (ppt)]
 ==Papers==
@@ Line 24: / Line 38: @@
 Fernando Paganini, J. C. Doyle and S. H. Low.<br>
 in Proceedings of IEEE CDC, Orlando, FL, Dec 2001 (475k).
+[http://www.cds.caltech.edu/%7Edoyle2/wiki/images/0/01/Infocom2001.pdf ''Heavy Tails, Generalized Coding, and Optimal Web Layout'']<br>
+Zhu X, Yu J, Doyle J,<br>
+in Proc. IEEE Infocom joint with CCS, Vol. 3: pp1617 - 1626, Apr 2001
 [http://www.cds.caltech.edu/%7Edoyle2/wiki/images/f/f0/PNAS4649-2000.full.pdf ''Robust perfect adaptation in bacterial chemotaxis through integral feedback control.]''<br>
@@ Line 29: / Line 47: @@
 Proc. Natl. Acad. Sci. USA 97(9):4649-4653, 2000.
-''Highly Optimized Tolerance: A Mechanism for Power Laws in Designed Systems'',<br>
+''Highly optimized tolerance: A mechanism for power laws in designed systems''<br>
-Carlson and Doyle,<br>
+JM Carlson, J Doyle<br>
-PRE, Abstract (text), Paper (postscript)
+Phys Rev E 60(2) 2, 1999
-''Heavy tails, generalized coding, and optimal web layout'',<br>
-Zhu, Yu, and Doyle,<br>
-<br>Infocomm, PS
-===Draft===
+*''Feedback regulation of the heat shock response in E. coli''<br>
-''Feedback regulation of the heat shock response in E. Coli, Kurata,'' <br>
+Kurata, H.   El-Samad, H.   Yi, T.-M.   Khammash, M.   Doyle, J. <br>
-El-Samad, Yi, Khammash, and Doyle, draft, (PS (7M) or Zipped (300k))
+IEEE CDC Vol 1 pp 837-842; Orlando, FL, USA 2001
+===Drafts===
 ''Theoretical Foundations for Ubiquitous, Networked Control, Communications, and Computing'',<br>
-working paper, PS
+working paper, [http://www.cds.caltech.edu/~doyle/Networks/th_nets.ps (PS)]
 ''Multiscale networking, robustness, and rigor'',<br>
-informal essay, HTML
+informal essay, [http://www.cds.caltech.edu/~doyle/Networks/rigor_robust.htm (html)]
-===PhD Thesis===
+''Notes on feedback'' [http://www.cds.caltech.edu/~doyle/Networks/fdbck_1.ppt (ppt)]
-''Structured semidefinite programs and semialgebraic geometry methods in robustness and optimization'', <br>
-Pablo Parrilo, <br>
-PhD Thesis, year??<br>
-Control and Dynamical Systems, Caltech, (Gzipped postscript)
-==Related reading==
+==Related topics==
-For more introductory papers on HOT, see: http://www.physics.ucsb.edu/~carlson
-===Related topics===
 [[Complex networks]]
 [[General complexity]]
-===Recommended books===
+[[Research|HOT]]
-''A course in Robust Control Theory: A Convex Approach'', Dullerud and Paganini, Springer
+==Related reading==
+===PhD Thesis===
+*''Structured semidefinite programs and semialgebraic geometry methods in robustness and optimization'', <br>
+PhD Thesis CDS, Caltech by Pablo Parrilo, 2000 [http://www.cds.caltech.edu/~pablo/thesis.ps.gz (Gzipped postscript)]
+===Book===
+[http://www.cds.caltech.edu/~doyle/SFI_robustness/books.htm Covers of recommended books below]
-''Essentials of Robust Control'', Zhou, Prentice-Hall
+''Essentials of robust control''<br>
+Kemin Zhou, John C. Doyle<br>
+Prentice-Hall, Englewood Cliffs, NJ, 1998, (ISBN: 0-13-790874-1)
-''Cells, Embryos, and Evolution'', Gerhart and Kirschner
+===Other books===
+[http://www.springer.com/math/book/978-0-387-98945-7 ''A Course in Robust Control Theory: A Convex Approach'']<br>
+Geir E. Dullerud and Fernando G. Paganini<br>
+Springer, 2000 (ISBN 0387989455, 9780387989457)
-===Old slides 2000?===
+''Cells, Embryos, and Evolution'',<br>
-Some old slides from a physics seminar: Powerpoint slides
+J Gerhart and M Kirschner
+Blackwell Sience, 1997 (ISBN 0-86542-574-4)
+===Link===
+For more introductory papers on HOT, see <http://www.physics.ucsb.edu/~carlson>
 ===Related news and commentary items===
@@ Line 87: / Line 111: @@
 *This link is broken (Aug 2008) for ''International Science News'', as the author is deceased. [http://unisci.com/stories/20001/0314004.htm]
 <! Hana unable to find original article for this link-->
+==Note==
+This page was copied from 2005 <http://www.cds.caltech.edu/~doyle/SFI_robustness/> and re-formatted with updated citation details. Note there are both internal wiki links, external links to <http://www.cds.caltech.edu/~doyle/SFI_robustness/> and elsewhere. Content from <http://www.cds.caltech.edu/~doyle/Networks/>, was merged onto this page due to large overlap in content.
+[[To Do]]
 [[Category:Papers by topic]]
 [[Category:Papers]]

Complexity and robustness: Difference between revisions

Latest revision as of 23:05, 12 September 2008

Contents

Slides

Older slides

Papers

Drafts

Related topics

Related reading

PhD Thesis

Book

Other books

Link

Related news and commentary items

Note

Navigation menu

Complexity and robustness: Difference between revisions

Latest revision as of 23:05, 12 September 2008

Slides

Older slides

Papers

Drafts

Related topics

Related reading

PhD Thesis

Book

Other books

Link

Related news and commentary items

Note

Navigation menu

Search